YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL39
Organism:	Saccharomyces cerevisiae
Length:	51 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL39.

Description	E-value	Query Range	Subject Range
gi\|109132071 - gi\|109132071\|ref\|XP_001083304.1\| PREDICTED: similar to UPF3 regulator of nonsense transcripts homolo...	98.0	[0..2]	[51..439]
gi\|62087734 - gi\|62087734\|dbj\|BAD92314.1\| ribosomal protein L39 variant [Homo sapiens]	81.0	[0..1]	[51..20]
gi\|50915614, gi\|... - gi\|50915614\|ref\|XP_468271.1\| putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-gro...	78.0	[0..1]	[50..68]
gi\|114586182 - gi\|114586182\|ref\|XP_001172916.1\| PREDICTED: similar to ribosomal protein L39 [Pan troglodytes]	74.0	[0..1]	[40..1]
gi\|88183639, gi\|... - gi\|88183639\|gb\|EAQ91107.1\| hypothetical protein CHGG_03042 [Chaetomium globosum CBS 148.51], gi\|1162...	68.0	[0..1]	[51..1]
gi\|73695310, gi\|... - gi\|73695310\|gb\|AAI03491.1\| LOC497860 protein [Rattus norvegicus], gi\|149042595\|gb\|EDL96232.1\| rCG497... gi\|12860000, gi\|... - gi\|30185776\|gb\|AAH51469.1\| Ribosomal protein L39-like [Mus musculus], gi\|148664888\|gb\|EDK97304.1\| RI...	68.0	[0..1]	[51..1]
gi\|73950507 - gi\|73950507\|ref\|XP_544459.2\| PREDICTED: similar to phosphatase and actin regulator 4 [Canis familiar...	68.0	[0..1]	[31..1]
gi\|61372022 - gi\|61372022\|gb\|AAX43773.1\| ribosomal protein L39 [synthetic construct]	67.0	[0..1]	[51..1]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQKSFRIK QKMAKAKKQN RPLPQWIRLR TNNTIRYNAK RRNWRRTKMN I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.399	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.357	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.316	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.287	d.52.1	Alpha-lytic protease prodomain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits