YRC Public Data Repository - Protein Structure Prediction

Protein:	MNN11
Organism:	Saccharomyces cerevisiae
Length:	422 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MNN11.

Description	E-value	Query Range	Subject Range
MNN11 - Subunit of a Golgi mannosyltransferase complex that also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, a...	0.0	[1..422]	[1..422]
GMA12_SCHPO - Alpha-1,2-galactosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gma12 PE=1... gma12 - alpha-1,2-galactosyltransferase Gma12	2.0E-85	[146..419]	[90..350]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-82	[136..421]	[54..336]
gi\|28925217, gi\|... - gi\|32413136\|ref\|XP_327048.1\| hypothetical protein [Neurospora crassa], gi\|28925217\|gb\|EAA34298.1\| co... gi\|85110589 - gi\|85110589\|ref\|XP_963534.1\| hypothetical protein NCU06762 [Neurospora crassa OR74A]	5.0E-80	[137..417]	[47..316]
XXT3_ARATH - Probable xyloglucan 6-xylosyltransferase 3 OS=Arabidopsis thaliana GN=XXT3 PE=2 SV=1	5.0E-72	[135..414]	[150..401]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKPRTKGK TYSSRSVGSQ WFNRLGFKQN KYGTCKFLSI ITAFVFILYF FSNRFYPISR  60
   61 SAGASYSPSH GLYINEIPAS SRLIYPH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEHVPVLKQM TVRGLYITRL EVDGSKRLIL KPEENALTDE EKKKTTDQIL LVKHSFLDHG  60
   61 KLVYRKSNDA PEVVVVTLID FENYELETII QIVQNRVDYA QKHQYGVYIR WIQEFLPVLE 120
  121 NQNLAESYEF IKPLVIRAAM HAFPTAKYIH FVDQDALLMN LDLSLQKYLL DPKIMDLALL 180
  181 KNVPVVANSN IKTYNHFEYS SAKIIIPHDA GGNIDASSFV IANDFYGKAL IDYLNDPLLR 240
  241 NFPWDNTGDK LSAAIGHILQ WHPTLLGKTA IVIPKVLASQ YDASLDQEGE SGNGASNGDV 300
  301 YHYNEGDLAA SFKGCRSRGT CASEIGHMYQ KIKKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [232-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAKYIHFVDQ DALLMNLDLS LQKYLLDPKI MDLALLKNVP VVANSNIKTY NHFEYSSAKI  60
   61 IIPHDAGGNI DASSFVIAND FYGKALIDYL NDPLLRNFPW DNTGDKLSAA IGHILQWHPT 120
  121 LLGKTAIVIP KVLASQYDAS LDQEGESGNG ASNGDVYHYN EGDLAASFKG CRSRGTCASE 180
  181 IGHMYQKIKK S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.41
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits