YRC Public Data Repository - Protein Structure Prediction

Protein:	KRE9
Organism:	Saccharomyces cerevisiae
Length:	276 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRE9.

Description	E-value	Query Range	Subject Range
KRE9 - Glycoprotein involved in cell wall beta-glucan assembly; null mutation leads to severe growth defect... KRE9_YEAST - Cell wall synthesis protein KRE9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRE9 PE... gi\|190409338 - gi\|190409338\|gb\|EDV12603.1\| cell wall synthesis protein KRE9 precursor [Saccharomyces cerevisiae RM1... gi\|207344146 - gi\|207344146\|gb\|EDZ71380.1\| YJL174Wp-like protein [Saccharomyces cerevisiae AWRI1631]	0.0	[1..276]	[1..276]
KNH1_CANGA - Cell wall synthesis protein KNH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0... KNH1_CANGA - Cell wall synthesis protein KNH1 OS=Candida glabrata GN=KNH1 PE=3 SV=1	2.0E-93	[8..276]	[1..258]
gi\|238880825 - gi\|238880825\|gb\|EEQ44463.1\| hypothetical protein CAWG_02732 [Candida albicans WO-1] KRE9_CANAX - Cell wall synthesis protein KRE9 OS=Candida albicans GN=KRE9 PE=3 SV=1	8.0E-80	[1..268]	[1..259]
YBY5_SCHPO - Uncharacterized protein C11C11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11C1... SPBC11C11.05 - KRE9 family cell wall biosynthesis protein	2.0E-72	[1..252]	[1..248]

Back

Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQRNSIIC ALVFLVSFVL GDVNIVSPSS KATFSPSGGT VSVPVEWMDN GAYPSLSKIS  60
   61 TFTFSLCTGP NNNIDCVAVL ASKITPSELT QDDKVYSYTA EFASTLTGNG QYYIQVFAQV 120
  121 DGQGYTIHYT PRFQLTSMGG VTAYTYSATT EPTPQTSIQT TTTNNAQATT IDSRSFTVPY 180
  181 TKQTGTSRFA PMQMQPNTKV TATTWTRKFA TSAVTYYSTF GSLPEQATTI TPGWSYTISS 240
  241 GVNYATPASM PSDNGGWYKP SKRLSLSARK INMRKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits