YRC Public Data Repository - Protein Structure Prediction

Protein:	HSP150
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSP150.

Description	E-value	Query Range	Subject Range
HSP150 - O-mannosylated heat shock protein that is secreted and covalently attached to the cell wall via beta... HS150_YEAST - Cell wall mannoprotein HSP150 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP150 PE=...	3.0E-63	[1..268]	[1..293]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-60	[1..268]	[1..294]
gi\|9655951, gi\|1... - gi\|9655951\|gb\|AAF94608.1\| RTX toxin RtxA [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15641462... gi\|11356121 - pir\|\|C82199 RTX toxin RtxA VC1451 [imported] - Vibrio cholerae (strain N16961 serogroup O1)	6.0E-58	[34..273]	[1085..1307]
gi\|4455065 - gi\|4455065\|gb\|AAD21057.1\| RtxA protein [Vibrio cholerae]	9.0E-58	[34..273]	[1072..1294]
gi\|15421148 - gi\|15421148\|gb\|AAK95385.1\| covalently-linked cell wall protein [Blumeria graminis]	8.0E-22	[154..260]	[150..258]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKKTLVAS ALAATTLAAY APSEPWSTLT PTATYSGGVT DYASTFGIAV QPISTTSSAS  60
   61 SAATTASSKA KRAASQIGDG QVQAATTTAS VSTKSTAAAV SQIGDGQIQA TTKTTAAAVS 120
  121 RDGQIQATTK TTSAKTTAAA VSQISDGQIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.42
Match:	1qqeA
Description:	Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [151-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATTTTLAPKS TAAAVSQIGD GQVQATTKTT AAAVSQIGDG QVQATTKTTA AAVSQIGDGQ  60
   61 VQATTKTTAA AVSQIGDGQV QATTKTTAAA VSQITDGQVQ ATTKTTQAAS QVSDGQVQAT 120
  121 TAWLLVTMMS STNVCPVLST TCTTNTLVVN VLQSTWKLSI

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.42
Match:	1qqeA
Description:	Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits