| Protein: | SSY5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 687 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSY5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..687] | [1..687] |
|
|
0.0 | [52..683] | [24..641] |
|
Region A: Residues: [1-687] |
1 11 21 31 41 51
| | | | | |
1 MVRFFGLNKK KNEEKENTDL PADNEQNAAE TSSSNVSGNE ERIDPNSHDT NPENANNDDA 60
61 STTFGSSIQS SSIFSRGRMT YGTGASSSMA TSEMRSHSSG HSGSKNSKNL QGFKDVGKPL 120
121 RAVSFLSPVK EEESQDTQNT LDVSSSTSST LATSENAREN SFTSRRSITL EYIHKSLSEL 180
181 EENLVDIMDD IHQDVISISK AVIEAIEYFK EFLPTTRDRI PYRISLEKSS SLRKINKIVL 240
241 HFLDNLLVSD AFSNSRSILL RRFYFFLKKL NLITDDDLIS ESGVLPCLSV FCIGSHCNLP 300
301 SMDKLGMILD ELTKMDSSII SDQEGAFIAP ILRGITPKSS ILTIMFGLPN LQHEHYEMIK 360
361 VLYSLFPDVH MYCVKDYIKK AASAVGSIPS HTAATIDTIA PTKFQFSPPY AVSENPLELP 420
421 ISMSLSTETS AKITGTLGGY LFPQTGSDKK FSQFASCSFA ITCAHVVLSE KQDYPNVMVP 480
481 SNVLQTSYKK VLTKESDRYP DGSVEKTAFL EEVQRIDQNL NWQKSNKFGQ VVWGERAIVD 540
541 HRLSDFAIIK VNSSFKCQNT LGNGLKSFPD PTLRFQNLHV KRKIFKMKPG MKVFKIGAST 600
601 GYTSGELNST KLVYWADGKL QSSEFVVASP TPLFASAGDS GAWILTKLED RLGLGLVGML 660
661 HSYDGEQRQF GLFTPIGDIL ERLHDCN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [118-392] |
1 11 21 31 41 51
| | | | | |
1 KPLRAVSFLS PVKEEESQDT QNTLDVSSST SSTLATSENA RENSFTSRRS ITLEYIHKSL 60
61 SELEENLVDI MDDIHQDVIS ISKAVIEAIE YFKEFLPTTR DRIPYRISLE KSSSLRKINK 120
121 IVLHFLDNLL VSDAFSNSRS ILLRRFYFFL KKLNLITDDD LISESGVLPC LSVFCIGSHC 180
181 NLPSMDKLGM ILDELTKMDS SIISDQEGAF IAPILRGITP KSSILTIMFG LPNLQHEHYE 240
241 MIKVLYSLFP DVHMYCVKDY IKKAASAVGS IPSHT
|
| Detection Method: | |
| Confidence: | 3.74 |
| Match: | 1bc9A |
| Description: | CYTOHESIN-1/B2-1 SEC7 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.854302719902887 | bayes_pls_golite062009 |
| protein binding | 0.434681706304734 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.181787767073972 | bayes_pls_golite062009 |
|
Region A: Residues: [393-567] |
1 11 21 31 41 51
| | | | | |
1 AATIDTIAPT KFQFSPPYAV SENPLELPIS MSLSTETSAK ITGTLGGYLF PQTGSDKKFS 60
61 QFASCSFAIT CAHVVLSEKQ DYPNVMVPSN VLQTSYKKVL TKESDRYPDG SVEKTAFLEE 120
121 VQRIDQNLNW QKSNKFGQVV WGERAIVDHR LSDFAIIKVN SSFKCQNTLG NGLKS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [568-687] |
1 11 21 31 41 51
| | | | | |
1 FPDPTLRFQN LHVKRKIFKM KPGMKVFKIG ASTGYTSGEL NSTKLVYWAD GKLQSSEFVV 60
61 ASPTPLFASA GDSGAWILTK LEDRLGLGLV GMLHSYDGEQ RQFGLFTPIG DILERLHDCN 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
