YRC Public Data Repository - Protein Structure Prediction

Protein:	SNA3
Organism:	Saccharomyces cerevisiae
Length:	133 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNA3.

Description	E-value	Query Range	Subject Range
gi\|190405125 - gi\|190405125\|gb\|EDV08392.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] SNA4 - Protein of unknown function, localized to the vacuolar outer membrane; predicted to be palmitoylated SNA4_YEAST - Protein SNA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNA4 PE=1 SV=1 gi\|151941880 - gi\|151941880\|gb\|EDN60236.1\| conserved protein [Saccharomyces cerevisiae YJM789]	128.0	[0..18]	[128..9]
RC24_ARATH - UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1	111.0	[0..17]	[83..3]
gi\|47132406 - gi\|47132406\|gb\|AAT11798.1\| salt and low temperature response protein [Brassica rapa subsp. pekinensi...	104.0	[0..16]	[81..2]
gi\|56412215 - gi\|56412215\|gb\|AAV88602.1\| low temperature and salt responsive protein [Pennisetum glaucum]	104.0	[0..18]	[90..5]
gi\|92868835 - gi\|92868835\|gb\|ABE78794.1\| Protein of unknown function UPF0057 [Medicago truncatula]	103.0	[0..17]	[83..3]
gi\|125564680 - gi\|125564680\|gb\|EAZ10060.1\| hypothetical protein OsI_32364 [Oryza sativa Indica Group] OSR8_ORYSA - Hydrophobic protein OSR8 - Oryza sativa (Rice) OSR8_ORYSJ - Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	103.0	[0..19]	[81..6]
CE12682 - status:Predicted UniProt:P92009 protein_id:CAB03250.1	102.0	[0..11]	[75..16]
gi\|54610977 - gi\|54610977\|gb\|AAV35467.1\| cold and salt response protein [Brassica napus]	101.0	[0..16]	[81..2]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRDHINDHD HRMSYSINKD DLLLMVLAVF IPPVAVWKRK GMFNRDTLLN LLLFLLLFFP  60
   61 AIIHACYVVY ETSSERSYDL SRRHATAPAV DRDLEAHPAE ESQAQPPAYD EDDEAGADVP 120
  121 LMDNKQQLSS GRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.148742
Match:	PF01679.8
Description:	No description for PF01679.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits