YRC Public Data Repository - Protein Structure Prediction

Protein:	YJL114W
Organism:	Saccharomyces cerevisiae
Length:	414 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL114W.

Description	E-value	Query Range	Subject Range
gi\|419899 - gi\|419899\|pir\|\|JC1482 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4	781.0	[0..1]	[414..1]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVRGETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVRQ YQRNLNRFKT  60
   61 ILNGLKAEEE KLSEADDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
  121 HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVENIPILLN NFKKFIKKYQ FDDVFENDII EIDPRENEIL CKIIKEGLGE SLDIMNTNTT  60
   61 DIFRIIDGLK KQNIEVCMVE MSELEPGEKV LVDTTCRNSA LLMNKLQKLV LMEKWIFSKC 120
  121 CQDCPNLKDY LQEAIMGTLH ESLRNSVKQR LYNIPHDVGI DHEEFLINTV IETVIDLSPI 180
  181 ADDQIENSCM YCKSVFHCSI NCKKKPNREL RPDSTNFSKT YYLQGAQRQQ PLKSSAKRTK 240
  241 VLEQDTKKVE QSVQQQKTGN Y