| Protein: | SET4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 560 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SET4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..560] | [1..560] |
|
|
9.0E-60 | [10..497] | [474..917] |
|
|
3.0E-59 | [70..480] | [329..733] |
|
|
4.0E-59 | [70..480] | [329..733] |
|
|
1.0E-54 | [69..480] | [317..734] |
|
|
2.0E-54 | [44..492] | [722..1162] |
|
|
6.0E-54 | [70..482] | [331..747] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MTSPESLSSR HIRQGRTYTT TDKVISRSSS YSSNSSMSKD YGDHTPLSVS SAASETLPSP 60
61 QYMPIRTFNT MPTAGPTPLH LFQNDRGIFN HHSSS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.584 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.584 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.427 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.427 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.372 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.372 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.315 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.287 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.287 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
|
Region A: Residues: [96-245] |
1 11 21 31 41 51
| | | | | |
1 GSSKTASTNK RGIAAAVALA TAATIPFPLK KQNQDDNSKV SVTHNESSKE NKITPSMRAE 60
61 DNKPKNGCIC GSSDSKDELF IQCNKCKTWQ HKLCYAFKKS DPIKRDFVCK RCDSDTKVQV 120
121 NQVKPMIFPR KMGDERLFQF SSIVTTSASN
|
| Detection Method: | |
| Confidence: | 4.045757 |
| Match: | 1fp0A_ |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.654291041691191 | bayes_pls_golite062009 |
|
Region A: Residues: [246-560] |
1 11 21 31 41 51
| | | | | |
1 TNQHQQSVNN IEEQPKKRQL HYTAPTTENS NSIRKKLRQE KLVVSSHFLK PLLNEVSSSN 60
61 DTEFKAITIS EYKDKYVKMF IDNHYDDDWV VCSNWESSRS ADIEVRKSSN ERDFGVFAAD 120
121 SCVKGELIQE YLGKIDFQKN YQTDPNNDYR LMGTTKPKVL FHPHWPLYID SRETGGLTRY 180
181 IRRSCEPNVE LVTVRPLDEK PRGDNDCRVK FVLRAIRDIR KGEEISVEWQ WDLRNPIWEI 240
241 INASKDLDSL PDPDKFWLMG SIKTILTNCD CACGYLGHNC PITKIKNFSE EFMRNTKESL 300
301 SNKSYFNTIM HNCKP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
