| Protein: | LSB6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 607 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSB6.
| Description | E-value | Query Range |
Subject Range |
|
|
580.0 | [0..149] | [607..9] |
|
|
578.0 | [0..149] | [607..134] |
|
|
495.0 | [0..75] | [525..35] |
|
|
472.0 | [0..57] | [525..9] |
|
|
451.0 | [0..75] | [525..43] |
|
|
451.0 | [0..75] | [525..43] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MSNEAYQHDH TVNPHQKIVV NSYDWLQFRD EQDHCKSKNP ITHASPGVGS NAQNSDIAEA 60
61 PQVFHPSYQS LVNVPSESPR PDQTSGSNPA VGLLHNAEDK ASGQEEE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.567 | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.383 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.379 | d.15.11 | Doublecortin (DC) |
| View | Download | 0.342 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.297 | a.60.8 | HRDC-like |
| View | Download | 0.284 | a.134.1 | Fungal elicitin |
| View | Download | 0.254 | d.15.2 | CAD & PB1 domains |
|
Region A: Residues: [108-401] |
1 11 21 31 41 51
| | | | | |
1 GSQYEIQYSV FRPLHAYPTK GLAYEQLRRK EEQEQRENFN HLVSDCIEAV ETFGRELERI 60
61 QTGSSGSYFV YGTRADESVP VGVFKPKDEE PYGPFSPKWT KWAHRTFFPC LFGRSCLIPN 120
121 LGYICESAAS LLDRRLETHL VPYTDTASIE SFNFYDNRKK WVLGYNLQKK KQKKLGSFQL 180
181 FLKEYINADE FFHKYPLPGM YSDVKHSFHR KSSGEDINHK PETTRNLTDE TEPSKQINSS 240
241 PISTESEENS KFEWTESSLS QFRLELEKLI ILDYIMRNTD RGLDNWMVKL IKLS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [402-555] |
1 11 21 31 41 51
| | | | | |
1 NNKWRLKLAA IDNGLSFPWK HPDEWRLYPY GWLYLPLQLL AKPFSEQMRS HFLPILTSTN 60
61 WWEESYQEFL ALFSRDQDFN VRMWKKQWAV LKGQAFNVVE TLKDPRQGPL ELVRRTRCQV 120
121 IDEKMQVPCC PPPVSIFKNA IDEPIGSYST SPMV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [556-607] |
1 11 21 31 41 51
| | | | | |
1 LPSTPSTIPF HAHNQSNSNP VYYDSTLHPF ANKTVIAERL QIVNSTPVFT WC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.368 | a.4.1 | Homeodomain-like |
| View | Download | 0.359 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.349 | d.253.1 | Description not found. |
| View | Download | 0.346 | a.4.1 | Homeodomain-like |
| View | Download | 0.346 | a.4.1 | Homeodomain-like |
| View | Download | 0.340 | d.253.1 | Description not found. |
| View | Download | 0.316 | a.4.1 | Homeodomain-like |
| View | Download | 0.250 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.222 | a.4.1 | Homeodomain-like |
