YRC Public Data Repository - Protein Structure Prediction

Protein:	ARP4
Organism:	Saccharomyces cerevisiae
Length:	489 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP4.

Description	E-value	Query Range	Subject Range
ACT2_ONCVO - Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1 gi\|158594157, gi... - gi\|170587336\|ref\|XP_001898433.1\| actin 2 [Brugia malayi], gi\|158594157\|gb\|EDP32745.1\| actin 2, putat...	0.0	[11..488]	[3..376]
gi\|26422172, gi\|... - gi\|26422172\|gb\|AAN78299.1\| actin 1 [Heterodera glycines], gi\|18314323\|gb\|AAG47837.2\|AF318603_1 actin... gi\|148966156, gi... - gi\|23194503\|gb\|AAN15196.1\| actin [Globodera rostochiensis], gi\|148966156\|gb\|ABR19891.1\| beta-actin [...	0.0	[11..488]	[3..376]
gi\|18565104 - gi\|18565104\|dbj\|BAB84579.1\| Actin 2 [Crassostrea gigas]	0.0	[10..488]	[2..376]
gi\|3421457 - gi\|3421457\|gb\|AAC32224.1\| cytoplasmic actin [Dreissena polymorpha]	0.0	[11..488]	[3..376]
ACTC_BIOOB - Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1	0.0	[11..488]	[3..376]
ACTC_PISOC - Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1	0.0	[11..488]	[3..376]
ACT2_SCHMA - Actin-2 OS=Schistosoma mansoni PE=2 SV=1 gi\|6979994, gi\|1... - gi\|6979994\|gb\|AAF34686.1\| actin [Schistosoma japonicum], gi\|189503078\|gb\|ACE06920.1\| unknown [Schist... gi\|186462275 - gi\|186462275\|gb\|ACC78609.1\| actin [Schistosoma bovis]	0.0	[11..488]	[3..376]
gi\|158598442, gi... - gi\|170579411\|ref\|XP_001894819.1\| actin [Brugia malayi], gi\|158598442\|gb\|EDP36330.1\| actin, putative ... gi\|6708156 - gi\|6708156\|gb\|AAF25819.1\| actin [Wuchereria bancrofti]	0.0	[11..488]	[3..376]
ACT_PLAMG - Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1	0.0	[11..488]	[3..376]
ACTC_BIOTE - Actin, cytoplasmic OS=Biomphalaria tenagophila PE=3 SV=1	0.0	[11..488]	[3..376]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAALQVYG GDEVSAVVID PGSYTTNIGY SGSDFPQSIL PSVYGKYTAD EGNKKIFSEQ  60
   61 SIGIPRKDYE LKPIIENGLV IDWDTAQEQW QWALQNELYL NSNSGIPALL TEPVWNSTEN 120
  121 RKKSLEVLLE GMQFEACYLA PT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [452-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWLGGSILTS LGTFHQLWVG KKEYEEVGVE RLLNDRFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1220.0
Match:	1dgaA_
Description:	No description for 1dgaA_ was found.

Predicted Domain #2

Region A:
Residues: [143-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STCVSFAAGR PNCLVVDIGH DTCSVSPIVD GMTLSKSTRR NFIAGKFINH LIKKALEPKE  60
   61 IIPLFAIKQR KPEFIKKTFD YEVDKSLYDY ANNRGFFQEC KETLCHICPT KTLEETKTEL 120
  121 SSTAKRSIES PWNEEIVFDN ETRYGFAEEL FLPKEDDIPA NWPRSNSGVV KTWRNDYVPL 180
  181 KRTKPSGVNK SDKKVTPTEE KEQEAVSKST SPAANSADTP NETGKRPLEE EKPPKENNEL 240
  241 IGLADLVYSS IMSSDVDLRA TLAHNVVLTG GTSSIPGLSD RLMTELNKIL PSLKFRILTT 300
  301 GHTIERQYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1220.0
Match:	1dgaA_
Description:	No description for 1dgaA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits