YRC Public Data Repository - Protein Structure Prediction

Protein:	RRG10
Organism:	Saccharomyces cerevisiae
Length:	85 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRG10.

Description	E-value	Query Range	Subject Range
gi\|49644296 - gi\|49644296\|emb\|CAG97867.1\| KLLA0F01771p [Kluyveromyces lactis] COA3_KLULA - Cytochrome c oxidase assembly factor 3, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CB...	127.0	[0..2]	[83..1]
gi\|45190444, gi\|... - gi\|45190444\|ref\|NP_984698.1\| AEL163Cp [Ashbya gossypii ATCC 10895], gi\|44983386\|gb\|AAS52522.1\| AEL16... COA3_ASHGO - Cytochrome c oxidase assembly factor 3, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 10...	127.0	[0..2]	[84..1]
COA3_DEBHA - Cytochrome c oxidase assembly factor 3, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / ... gi\|49656730\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767]	87.0	[0..6]	[85..11]
gi\|49645639 - gi\|49645639\|emb\|CAG83699.1\| YALI0A05137p [Yarrowia lipolytica] COA3_YARLI - Cytochrome c oxidase assembly factor 3, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 15...	86.0	[0..2]	[85..24]
gi\|46105925, gi\|... - gi\|46105925\|ref\|XP_380576.1\| hypothetical protein FG00400.1 [Gibberella zeae PH-1], gi\|42544574\|gb\|E...	50.0	[0..1]	[65..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNPSKYQD TRTWKMTPAM IRARKPFFKG NMLGLTLLLG VTGSVYYYTY HFLHKDNDFA  60
   61 DVPIPPIDPQ ELEALKKEYE AKKKA

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.825	d.52.1	Alpha-lytic protease prodomain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits