| Protein: | IKS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 667 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IKS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..667] | [1..667] |
|
|
0.0 | [122..642] | [14..431] |
|
|
0.0 | [68..645] | [18..442] |
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0.0 | [37..644] | [49..513] |
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0.0 | [68..645] | [18..442] |
|
|
0.0 | [49..644] | [17..480] |
|
|
0.0 | [168..642] | [8..382] |
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0.0 | [168..642] | [9..382] |
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0.0 | [168..642] | [9..382] |
|
|
0.0 | [168..642] | [8..382] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MSLVPYEEGS LILDDPNSKS VVVVNPTSGT LSFFQQDNSN NDSELNEDQT ASLSALDFPS 60
61 GIHQYKSPIA SYVCPQCGTE INPDIINRRQ LHRRASAGVE SESSRLSIPE NTVPLGFEFA 120
121 NSSFSRRYFQ SLERNHRHYA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.388 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.386 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.383 | a.26.1 | 4-helical cytokines |
| View | Download | 0.364 | a.1.1 | Globin-like |
| View | Download | 0.351 | a.1.1 | Globin-like |
| View | Download | 0.344 | c.55.3 | Ribonuclease H-like |
| View | Download | 0.325 | a.22.1 | Histone-fold |
| View | Download | 0.324 | a.24.4 | Hemerythrin |
| View | Download | 0.319 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.246 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.226 | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.213 | a.39.3 | Cloroperoxidase |
| View | Download | 0.209 | a.7.7 | BAG domain |
| View | Download | 0.206 | b.88.1 | Mss4-like |
|
Region A: Residues: [141-279] |
1 11 21 31 41 51
| | | | | |
1 LQNDSNNKQG QFSKNKYFIP DDLFIPGYFR KFFKILSLLG NGARGSVYKV VHTIGNTELG 60
61 VFALKKIPIG NDMEWFNKCI REVKALSSLT HKSANLITYN HVWLEMDSSV GFVRSIDGSQ 120
121 SDSQEEVPCI FILQQYCSG
|
| Detection Method: | |
| Confidence: | 148.38764 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [280-570] |
1 11 21 31 41 51
| | | | | |
1 GNLEDCILRK VFNRFSDTES PEERKKKFRT RKKNHGKSGE VGLSTEQLVS IIRDIARGLH 60
61 ELHSIGLIHR DLKPSNCLLL TPFKSDNEND NVYDREHNSD EFFPSIVIGD LGESQLEGES 120
121 RLGTGCTGTL EFTAPDLIIQ GRPVSSSTLP SRSSHTYNEY TFASDMYSLG MICYFIVFGE 180
181 LPFEPQLDIV DLKVRIKNFR FDTEGMIEKH QAMKLKPIDR RIFHLMDALL QPNNDARPTA 240
241 KTVEETLDEM LINSKPGKKF WKENVDSTLN FSTISEVNEN TNSFTDDYID G
|
| Detection Method: | |
| Confidence: | 148.38764 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [571-667] |
1 11 21 31 41 51
| | | | | |
1 DNVTLSLPAP EENLSTVSTQ NLQKYSALNR TIQVCYKLVS MILTIIIFKC TKTGSWLSYM 60
61 SLILLGMVFK SPADERGKHA RALVLLAFIA ACKKYIY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.786 | a.46.1 | Methionine synthase domain |
| View | Download | 0.769 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.734 | a.24.4 | Hemerythrin |
| View | Download | 0.721 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.696 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.547 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.544 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.539 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.538 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.537 | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
| View | Download | 0.529 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.521 | a.1.1 | Globin-like |
| View | Download | 0.515 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.513 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.511 | a.3.1 | Cytochrome c |
| View | Download | 0.498 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.493 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.477 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.427 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.417 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.416 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.401 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.393 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.388 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.382 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.367 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.366 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.364 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.363 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.360 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.339 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.331 | a.29.2 | Bromodomain |
| View | Download | 0.320 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.319 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.316 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.314 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.310 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.310 | a.26.1 | 4-helical cytokines |
| View | Download | 0.307 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.306 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.306 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.306 | a.24.3 | Cytochromes |
| View | Download | 0.304 | b.82.4 | Regulatory protein AraC |
| View | Download | 0.298 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.292 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.283 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.281 | a.24.3 | Cytochromes |
| View | Download | 0.276 | a.3.1 | Cytochrome c |
| View | Download | 0.274 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.274 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.271 | a.25.1 | Ferritin-like |
| View | Download | 0.265 | a.77.1 | DEATH domain |
| View | Download | 0.265 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.263 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.262 | a.112.1 | Description not found. |
| View | Download | 0.262 | a.11.2 | Second domain of FERM |
| View | Download | 0.261 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.258 | a.39.1 | EF-hand |
| View | Download | 0.255 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.255 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.252 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.249 | a.47.2 | t-snare proteins |
| View | Download | 0.244 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.243 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.238 | a.130.1 | Chorismate mutase II |
| View | Download | 0.238 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.235 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.233 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.232 | a.1.1 | Globin-like |
| View | Download | 0.232 | a.4.1 | Homeodomain-like |
| View | Download | 0.232 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.229 | a.4.1 | Homeodomain-like |
| View | Download | 0.229 | a.185.1 | Gametocyte protein Pfg27 |
| View | Download | 0.224 | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.224 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.220 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.218 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.217 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.212 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.207 | a.19.1 | Fertilization protein |
| View | Download | 0.205 | a.1.1 | Globin-like |
| View | Download | 0.205 | d.79.1 | YjgF-like |
| View | Download | 0.204 | a.4.1 | Homeodomain-like |
| View | Download | 0.202 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.200 | a.60.9 | lambda integrase-like, N-terminal domain |
