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View Structure Prediction Details

Protein: YJL043W
Organism: Saccharomyces cerevisiae
Length: 257 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL043W.

Description E-value Query
Range
Subject
Range
gi|51012779 - gi|51012779|gb|AAT92683.1| YJL043W [Saccharomyces cerevisiae]
533.0 [0..1] [257..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVDYSGLER YTDINASFGK LVNTYCCFQR CEAISEQLEI LKSLVPKCHD IVALTDEDFA  60
   61 SGRTAGLTQK LFAMAMTLHQ ITDCIDLLQK CNTIIPIEIA NPASFESGAA TAPLRQSYAR 120
  121 LLDDWSHYMG PSTV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.479 N/A N/A a.26.1 4-helical cytokines
View Download 0.421 N/A N/A a.26.1 4-helical cytokines
View Download 0.413 N/A N/A a.7.1 Spectrin repeat
View Download 0.408 N/A N/A a.7.1 Spectrin repeat
View Download 0.385 N/A N/A a.7.1 Spectrin repeat

Predicted Domain #2
Region A:
Residues: [135-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHTGCTNRPK WRFPWQQSRT IIIPMLFIGE TAMSTRDLRS VLHDCEIRHA SEMPLQLLWT  60
   61 SSPELVYATP HVDDYDIWSR YGSDYNMQIE DEDEASKGRQ RKCVVQLEAL LGALPTTDPL 120
  121 FQW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle