YRC Public Data Repository - Protein Structure Prediction

Protein:	SNX4
Organism:	Saccharomyces cerevisiae
Length:	423 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNX4.

Description	E-value	Query Range	Subject Range
SNX4 - Sorting nexin, involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Gol... gi\|151945049 - gi\|151945049\|gb\|EDN63300.1\| sorting nexin [Saccharomyces cerevisiae YJM789] SNX4_YEAST - Sorting nexin-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNX4 PE=1 SV=1	2.0E-66	[1..423]	[1..423]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-50	[22..420]	[1926..2337]
gi\|20455497 - gi\|20455497\|sp\|P05661\|MYSA_DROME Myosin heavy chain, muscle	1.0E-49	[22..420]	[1926..2337]
SNX2_MOUSE - Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2	4.0E-46	[11..422]	[125..514]
gi\|1408194 - gi\|1408194\|gb\|AAB03661.1\| myosin heavy chain [Placopecten magellanicus]	1.0E-45	[3..420]	[1456..1888]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKGKNDLT SKAKDKARGN PEKPPYWFEI IVSDPQKRTG DPGSSSGYVS YQISTKTNNT  60
   61 SFYDNRGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	1h6hA_
Description:	p40phox NADPH oxidase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [69-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESIIVVHRR YSDLLLLHDI LLNRFPTCII PPLPDKKVFQ YIAGDRFSQR FTQKRCHSLQ  60
   61 NFLRRVSLHP DLSQSKVFKT FLVSKDWESH RKVLQDSLQP NKDEVTDAFM NAFKTVHKQN 120
  121 EEFTEIREKS DKLDRTVTKI DKLFHKVVKK NDSMSEDYTK LGSNLQELQE LVTGENEELA 180
  181 AKLKIFNEGV TQLSYGLQDL TKYLDYEYIV DLKDLEHYID SMRQLIKLKD QKQIDYEELS 240
  241 DYLTRSIKEK NNLISGYGGS NFFANKLEEL AGINQEASRR EKINKLEGKI TSLTGELENA 300
  301 KKVADGFEQE CLKEIDHFES VKTAEIKKSL GSLADHHIEF YERILEAWEK VDDSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.221849
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits