YRC Public Data Repository - Protein Structure Prediction

Protein:	BET4
Organism:	Saccharomyces cerevisiae
Length:	290 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET4.

Description	E-value	Query Range	Subject Range
gi\|13775066 - gi\|13775066\|gb\|AAK39123.1\|AF363030_1 UDP-N-acetylglucosaminyltransferase [Mus musculus]	6.0E-36	[1..274]	[98..384]
OGT1_RAT - UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicu...	6.0E-36	[1..274]	[88..374]
OGT - O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylgluco... gi\|123993895, gi... - gi\|224487755\|dbj\|BAH24112.1\| O-linked N-acetylglucosamine (GlcNAc) transferase [synthetic construct]...	8.0E-36	[1..274]	[88..374]
SPY_PETHY - Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida...	8.0E-36	[1..267]	[234..492]
FNTA_SOLLC - Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum G...	2.0E-35	[6..287]	[58..324]
gi\|7459511 - pir\|\|F69210 conserved hypothetical protein MTH83 - Methanobacterium thermoautotrophicum (strain Delt... gi\|2621120, gi\|1... - gi\|2621120\|gb\|AAB84589.1\| O-linked GlcNAc transferase [Methanothermobacter thermautotrophicus str. D...	4.0E-35	[1..250]	[93..320]
gi\|5052534 - gi\|5052534\|gb\|AAD38597.1\|AF145622_1 BcDNA.GH04245 [Drosophila melanogaster]	4.0E-35	[3..278]	[129..418]
ogt-1 - status:Confirmed UniProt:O18158 protein_id:AAA62535.2	1.0E-34	[3..250]	[204..463]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEKIYSIE ALKKTSELLE KNPEFNAIWN YRRDIIASLA SELEIPFWDK ELVFVMMLLK  60
   61 DYPKVYWIWN HRLWVLKHYP TSSPKVWQTE LAVVNKLLEQ DARNYHGWHY RRIVVGNIES 120
  121 ITNKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	288.927757
Match:	1dceA_
Description:	Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKEEFEYTT IKINNNISNY SAWHQRVQII SRMFQKGEVG NQKEYIRTEI SYIINAMFTD  60
   61 AEDQSVWFYI KWFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	288.927757
Match:	1dceA_
Description:	Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [200-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNDIVCKTLD EQEYLKMLKD LRENILLINN DEIEFSGKQN IWCLKILLVL EDILEEKEAL  60
   61 TERSSEQYLV QLIDADPLRK NRYLHLLEQH K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1ihgA_
Description:	Cyclophilin 40; Cyclophilin 40 isomerase domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits