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View Structure Prediction Details

Protein: MPS3
Organism: Saccharomyces cerevisiae
Length: 620 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for MPS3.

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSNEHRRE EAGAANEQMP YNKAVKSAYA DVLKDKMNRE QEISLRAIKK GIYTDGGETD  60
   61 NYDMDKENDS AYEMFKKNLD FPLDQHNDDD DDDPYIEDNG QETDGYSDED 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTDEADKSFI EDSDSDSYDL ESNSDFEENL ESSGEAKKLK WRTYIFYGGL FFVFYFFGSF  60
   61 LMTTVKNNDL ESHSSGATSS PGKSFSNLQK QVNHLYSELS KRDEKHSSEL DKTVKIIVSQ 120
  121 FEKNIKRLLP SNLVNFENDI NSLTKQVETI STSMSELQRR NHKFTVENVT QWQDQLVKQL 180
  181 DTHLPQEIPV VINNSSSLLI IPELHNYLSA LISDVIESPG IGTAGSAESR WEYDLNRYVK 240
  241 EILSNELQYI DKDYFIQEMN RRLQSNKQEI WEEITNRLET QQQQQQQQVQ QDYSNVPQQY 300
  301 SSILMKRLIH QIYNS

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.13
Match: 1nf1A
Description: GAP related domain of neurofibromin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [426-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQHQWEDDLD FATYVQGTKL LNHLTSPTWR QGSGVQPIEL LTDSKQSSST YWQCENEPGC  60
   61 SWAIRFKTPL YLTKISYMHG RFTNNLHIMN SAPRLISLYV KLSQTKEIKA LQTLANQYGF 120
  121 GQHHKRDRNY IKIAKFEYRL TDSRIRQQMY LPPWFIQLKP LVRSIVFQVD ENYGNKKFIS 180
  181 LRKFIINGVT PQICK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle