YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC17
Organism:	Saccharomyces cerevisiae
Length:	161 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC17.

Description	E-value	Query Range	Subject Range
RPC17 - RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in...	6.0E-50	[1..161]	[1..161]
gi\|10177473 - gi\|10177473\|dbj\|BAB10864.1\| unnamed protein product [Arabidopsis thaliana]	1.0E-31	[41..157]	[21..139]
gi\|18376138, gi\|... - gi\|32415489\|ref\|XP_328224.1\| predicted protein [Neurospora crassa], gi\|28916993\|gb\|EAA26721.1\| predi... gi\|85076644 - gi\|85076644\|ref\|XP_955957.1\| hypothetical protein NCU01785 [Neurospora crassa OR74A]	2.0E-31	[1..158]	[1..129]
rpc17 - DNA-directed RNA polymerase III complex subunit Rpc17 RPC9_SCHPO - DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	4.0E-30	[1..159]	[1..126]
CE01606 - WBGene00010911 Zinc-binding dehydrogenases status:Partially_confirmed TR:Q09593 protein_id:CAA87050....	6.0E-30	[1..158]	[402..520]
gi\|55628662 - gi\|55628662\|ref\|XP_519126.1\| PREDICTED: calcitonin gene-related peptide-receptor component protein i... CRCP - CGRP receptor component	5.0E-27	[1..159]	[1..122]
RPC9_CAVPO - DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1	2.0E-26	[1..158]	[1..122]
RPC9_MOUSE - DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1	2.0E-26	[1..159]	[1..122]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLEERNAF LSDYEVLKFL TDLEKKHLWD QKSLAALKKS RSKGKQNRPY NHPELQGITR  60
   61 NVVNYLSINK NFINQEDEGE ERESSGAKDA EKSGISKMSD ESFAELMTKL NSFKLFKAEK 120
  121 LQIVNQLPAN MVHLYSIVEE CDARFDEKTI EEMLEIISAY A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits