YRC Public Data Repository - Protein Structure Prediction

Protein:	YAP5
Organism:	Saccharomyces cerevisiae
Length:	245 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAP5.

Description	E-value	Query Range	Subject Range
YAP5 - Basic leucine zipper (bZIP) transcription factor YAP5_YEAST - AP-1-like transcription factor YAP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAP5... gi\|190406205 - gi\|190406205\|gb\|EDV09472.1\| hypothetical protein SCRG_05161 [Saccharomyces cerevisiae RM11-1a] gi\|207344232 - gi\|207344232\|gb\|EDZ71443.1\| YIR018Wp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-64	[1..245]	[1..245]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-28	[8..198]	[225..417]
gi\|5381311 - gi\|5381311\|gb\|AAD42937.1\|AF084971_1 G-box binding protein 1 [Catharanthus roseus]	1.0E-26	[7..204]	[230..424]
CPRF1_PETCR - Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1	2.0E-24	[5..204]	[211..409]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLIKPKE SEESHLALLS KIHVSKNWKL PPRLPHRAAQ RRKRVHRLHE DYETEENDEE  60
   61 LQKKKRQNRD AQRAYRERKN NKLQVLEETI ESLSKVVKNY ETKLNRLQNE LQAKESENHA 120
  121 LKQKLETLTL KQASVPAQDP ILQNLIENFK PMKAIPIKYN TAIKRHQHST ELPSSVKCGF 180
  181 CNDNTTCVCK ELE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1hjbA_
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [194-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDHRKSDDGV ATEQKDMSMP HAECNNKDNP NGLCSNCTNI DKSCIDIRSI IH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits