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View Structure Prediction Details

Protein: PRI1
Organism: Saccharomyces cerevisiae
Length: 409 amino acids
Reference: Malmstr÷m L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRI1.

Description E-value Query
Range
Subject
Range
PRI1_YEAST - DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI1 PE=1 SV=2
PRI1 - Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair
0.0 [1..409] [1..409]
PRI1_MOUSE - DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1
0.0 [12..399] [10..412]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [12..399] [10..412]
gi|114644211 - gi|114644211|ref|XP_001168535.1| PREDICTED: DNA primase small subunit, 49kDa [Pan troglodytes]
gi|157929174, gi... - gi|157929174|gb|ABW03872.1| primase, DNA, polypeptide 1 (49kDa) [synthetic construct], gi|157928534|...
PRIM1 - primase, DNA, polypeptide 1 (49kDa)
0.0 [12..399] [10..415]
gi|3676248 - gi|3676248|emb|CAA09723.1| DNA polymerase alpha subunit IV (primase) [Rattus norvegicus]
0.0 [12..399] [12..414]
spp1 - DNA primase catalytic subunit Spp1
PRI1_SCHPO - DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri1 PE=1 SV=1
0.0 [3..400] [23..451]
DNApol-alpha50-PA - The gene DNA polymerase ├?Ž├?┬▒ 50kD is referred to in FlyBase by the symbol Dmel\DNApol-├?&#14...
0.0 [15..409] [32..438]
PRI1_PLAFK - DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1
PRI1_PLAF7 - DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0366 PE=3 SV=1
gi|1430925 - gi|1430925|emb|CAA67626.1| primase [Plasmodium falciparum]
0.0 [1..401] [5..444]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSVKTNGP SSSDMEYYYK SLYPFKHIFN WLNHSPKPSR DMINREFAMA FRSGAYKRYN  60
   61 SFNSVQDFKA QIEKANPDRF EIGAIYNKPP RERDTLLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 131.30103
Match: 1g71A_
Description: DNA primase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [99-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELKALEKEL VFDIDMDDYD AFRTCCSGAQ VCSKCWKFIS LAMKITNTAL REDFGYKDFI  60
   61 WVFSGRRGAH CWVSDKRARA LTDVQRRNVL DYVNV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [308-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLYPKLDVEV TKQTIHLLKA PFCIHPATGN VCVPIDESFA PEKAPKLIDL QTEMEKNNDV  60
   61 SLTALQPFIN QFQAYVSSLL KNELGSVKRE REDDDEPASL DF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 131.30103
Match: 1g71A_
Description: DNA primase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [194-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRDRNTDKRL ALKRPYHPHL ARSLEQLKPF FVSIMLEEQN PWEDDQHAIQ TLLPALYDKQ  60
   61 LIDSLKKYWL DNPRRSSKEK WNDIDQIATS LFKGPKQDSH IIKLRECKED LVLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 131.30103
Match: 1g71A_
Description: DNA primase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle