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View Structure Prediction Details

Protein: IST3
Organism: Saccharomyces cerevisiae
Length: 148 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IST3.

Description E-value Query
Range		 Subject
Range
gi|13540314 - gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
 6.0E-47 [2..145] [153..302]
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
 6.0E-47 [2..145] [153..302]
PABPC4 - poly(A) binding protein, cytoplasmic 4 (inducible form)
 7.0E-47 [2..145] [153..302]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1
 8.0E-47 [2..145] [153..302]
gi|2665654 - gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
 1.0E-45 [2..145] [153..303]
gi|19526272 - gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
 3.0E-45 [2..145] [153..302]

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Predicted Domain #1
Region A:
Residues: [1-148] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIQQINDK ELQSGILSPH QSWHNEYKDN AYIYIGNLNR ELTEGDILTV FSEYGVPVDV  60
   61 ILSRDENTGE SQGFAYLKYE DQRSTILAVD NLNGFKIGGR ALKIDHTFYR PKRSLQKYYE 120
  121 AVKEELDRDI VSKNNAEKLI LAKKDQPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.30103
Match: 1ha1__
Description: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle