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View Structure Prediction Details

Protein: COA1
Organism: Saccharomyces cerevisiae
Length: 197 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COA1.

Description E-value Query
Range
Subject
Range
COA1_YEAST - Cytochrome c oxidase assembly factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=C...
COA1 - Mitochondrial inner membrane protein required for assembly of the cytochrome c oxidase complex (comp...
0.0 [1..197] [1..197]
COA1_SCHPO - Cytochrome c oxidase assembly factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coa...
SPBC16E9.03c - DUF1783 family protein
2.0E-53 [77..188] [128..238]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRLVTKGL PKVTPSAAKA VLVRGSLLHS FSTSARFNNS VAEDEAKIVL KDKNRPLRID  60
   61 RELPDPTTER RKRIAGFLLF SVAIGSALSL IFNYEKTESP IISNTLYYIR RSPATKNILG 120
  121 ESIEFDGIIP WVYGELNSVK GRINITFYIK GDKNVTGTVR LVADRNTHDE EFLIHEWSVT 180
  181 AAGQKIDLLA ENTKTPI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESPIISNTL YYIRRSPATK NILGESIEFD GIIPWVYGEL NSVKGRINIT FYIKGDKNVT  60
   61 GTVRLVADRN THDEEFLIHE WSVTAAGQKI DLLAENTKTP I

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 2ciuA
Description: No description for 2ciuA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle