YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL16A
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL16A.

Description	E-value	Query Range	Subject Range
gi\|190689373, gi... - gi\|190690735\|gb\|ACE87142.1\| ribosomal protein L13a protein [synthetic construct], gi\|190689373\|gb\|AC... RPL13A - ribosomal protein L13a gi\|114678455, gi... - gi\|55628330\|ref\|XP_527683.1\| PREDICTED: similar to ribosomal protein L13a; 60S ribosomal protein L13...	5.0E-70	[1..197]	[1..196]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-69	[2..199]	[1..200]
RL13A_RAT - 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2	3.0E-68	[1..198]	[1..200]
RL13A_MOUSE - 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4 gi\|55715983 - gb\|AAH86250.1\| Unknown (protein for MGC:98767) [Xenopus laevis]	7.0E-68	[1..198]	[1..200]
RL16B_SCHPO - 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 S... rpl1601 - 60S ribosomal protein L13 /L16	4.0E-61	[1..199]	[1..197]
RL16A_YEAST - 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL16A PE=1 ... RPL16A - N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA;...	6.0E-61	[1..199]	[1..199]
gi\|15293895 - gi\|15293895\|gb\|AAK95140.1\| ribosomal protein L13a [Ictalurus punctatus]	2.0E-60	[5..197]	[3..194]
gi\|49093756, gi\|... - gi\|67527912\|ref\|XP_661806.1\| RL16_NEUCR 60S ribosomal protein L16 [Aspergillus nidulans FGSC A4], re... gi\|5853244 - gi\|5853244\|gb\|AAD54383.1\|AF178537_1 ribosomal protein L16a [Emericella nidulans]	2.0E-60	[6..199]	[7..202]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEPVVVID GKGHLVGRLA SVVAKQLLNG QKIVVVRAEE LNISGEFFRN KLKYHDFLRK  60
   61 ATAFNKTRGP FHFRAPSRIF YKALRGMVSH KTARGKAALE RLKVFEGIPP PYDKKKRVVV 120
  121 PQALRVLRLK PGRKYTTLGK LSTSVGWKYE DVVAKLEAKR KVSSAEYYAK KRAFTKKVAS 180
  181 ANATAAESDV AKQLAALGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	768.218487
Match:	1k5yM_
Description:	No description for 1k5yM_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits