YRC Public Data Repository - Protein Structure Prediction

Protein:	RRT14
Organism:	Saccharomyces cerevisiae
Length:	206 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT14.

Description	E-value	Query Range	Subject Range
RRT14 - Putative protein of unknown function; identified in a screen for mutants with decreased levels of rD... RRT14_YEAST - Regulator of rDNA transcription protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	1.0E-79	[1..196]	[1..196]
SLK_RAT - STE20-like serine/threonine-protein kinase OS=Rattus norvegicus GN=Slk PE=1 SV=1	0.004	[47..175]	[937..1087]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.004	[47..175]	[965..1115]
gi\|124297506, gi... - gi\|4741823\|gb\|AAD28717.1\|AF112855_1 Ste20-related kinase SMAK [Mus musculus], gi\|124297506\|gb\|AAI316...	0.004	[47..175]	[936..1086]
gi\|55957392, gi\|... - gi\|84105520\|gb\|AAI11566.1\| SLK protein [Homo sapiens], gi\|55957392\|emb\|CAI12396.1\| Ste20-related ser...	0.008	[47..175]	[938..1088]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLSQTSK YQATSVVNGL LSNLLPGVPK IRANNGKTSV NNGSKAQLID RNLKKRVQLQ  60
   61 NRDVHKIKKK CKLVKKKKVK KHKLDKEQLE QLAKHQVLKK HQHEGTLTDH ERKYLNKLIK 120
  121 RNSQNLRSWD LEEEVRDELE DIQQSILKDT VSTANTDRSK RRRFKRKQFK EDIKESDFVK 180
  181 DHRYPGLTPG LAPVGLSDEE DSSEED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits