YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRM5
Organism: Saccharomyces cerevisiae
Length: 318 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM5.

Description E-value Query
Range
Subject
Range
PRM5_YEAST - Pheromone-regulated membrane protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=P...
PRM5 - Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrit...
3.0E-95 [1..318] [1..318]
gi|12718466, gi|... - gi|32405774|ref|XP_323500.1| hypothetical protein [Neurospora crassa], gi|28922859|gb|EAA32080.1| hy...
gi|85102317 - gi|85102317|ref|XP_961316.1| hypothetical protein NCU04160 [Neurospora crassa OR74A]
7.0E-78 [2..311] [46..329]

Back

Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVITIAKRG LPKLTTSTSS TTTASSSSTI TSVASSSSSL PLLSNSTSSS IIPSITPPSR  60
   61 NGNPYILDSG DMPNGTVFIV VGGIAGVIFL AILLWWVITT YSSHRLTRSV QDYESKMFST 120
  121 QHTQFYGDSP YMDYPAKENF QDQVHISESD ISPGNKDESV KDALVSHTNN EKPFLSNFER 180
  181 PLFSLASESN RNSLFISPTG DILYKTRLSK LYQESPRLLQ KPVIMTSDNV STNSLVSTIS 240
  241 SSSASSLDNG NEKEVGEDIR KPAKIASSPS RKLLNSPESD GSVNRNHSKG NLLVVQSKRK 300
  301 PTPSTYLEHM LEGKEQDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle