YRC Public Data Repository - Protein Structure Prediction

Protein:	SDP1
Organism:	Saccharomyces cerevisiae
Length:	209 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDP1.

Description	E-value	Query Range	Subject Range
gi\|114603388, gi... - gi\|114603390\|ref\|XP_527120.2\| PREDICTED: dual specificity phosphatase 1 isoform 2 [Pan troglodytes],... gi\|208966164 - gi\|208966164\|dbj\|BAG73096.1\| dual specificity phosphatase 1 [synthetic construct] DUSP1 - dual specificity phosphatase 1	7.0E-49	[10..196]	[128..314]
DUS1_RAT - Dual specificity protein phosphatase 1 OS=Rattus norvegicus GN=Dusp1 PE=1 SV=1	2.0E-47	[10..196]	[128..314]
gi\|1336816 - gi\|1336816\|gb\|AAB36123.1\| 3CH134/CL100 PTPase [Rattus sp.]	3.0E-47	[10..196]	[128..314]
gi\|409977 - gi\|409977\|gb\|AAB27882.1\| nontransmembrane protein tyrosine phosphatase; ERP [Mus sp.] DUS1_MOUSE - Dual specificity protein phosphatase 1 OS=Mus musculus GN=Dusp1 PE=1 SV=1	5.0E-47	[10..196]	[128..314]
gi\|2582561 - gi\|2582561\|gb\|AAB82587.1\| MAP kinase phosphatase-1 [Gallus gallus]	1.0E-45	[10..196]	[116..303]
SDP1 - Stress-inducible dual-specificity MAP kinase phosphatase, negatively regulates Slt2p MAP kinase by d... SDP1_YEAST - Dual-specificity protein phosphatase SDP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	7.0E-45	[1..209]	[1..209]
DUS1B_XENLA - Dual specificity protein phosphatase 1-B OS=Xenopus laevis GN=dusp1-b PE=2 SV=1	3.0E-44	[10..196]	[129..316]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIYTSPTRT PNIAPKSGQR PSLPMLATDE RSTDKESPNE DREFVPCSSL DVRRIYPKGP  60
   61 LLVLPEKIYL YSEPTVKELL PFDVVINVAE EANDLRMQVP AVEYHHYRWE HDSQIALDLP 120
  121 SLTSIIHAAT TKREKILIHC QCGLSRSATL IIAYIMKYHN LSLRHSYDLL KSRADKINPS 180
  181 IGLIFQLMEW EVALNAKTNV QANSYRKVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.522879
Match:	1mkp__
Description:	Mapk phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits