YRC Public Data Repository - Protein Structure Prediction

Protein:	FMC1
Organism:	Saccharomyces cerevisiae
Length:	155 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMC1.

Description	E-value	Query Range	Subject Range
gi\|49525788 - gi\|49525788\|emb\|CAG59407.1\| unnamed protein product [Candida glabrata] gi\|50288103, gi\|... - gi\|50288103\|ref\|XP_446480.1\| unnamed protein product [Candida glabrata], gi\|49525788\|emb\|CAG59407.1\|...	99.0	[0..9]	[154..6]
gi\|49644401, gi\|... - gi\|50310491\|ref\|XP_455265.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644401\|emb\|CAG9797... gi\|49644401\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	79.0	[0..6]	[154..5]
gi\|44982410 - gi\|44982410\|gb\|AAS51696.1\| ADL224Cp [Ashbya gossypii ATCC 10895] gi\|44982410, gi\|... - gi\|45187649\|ref\|NP_983872.1\| ADL224Cp [Ashbya gossypii ATCC 10895], gi\|44982410\|gb\|AAS51696.1\| ADL22...	65.0	[0..10]	[154..11]
gi\|49649442, gi\|... - gi\|50552326\|ref\|XP_503573.1\| YALI0E05181p [Yarrowia lipolytica], gi\|49649442\|emb\|CAG79154.1\| unnamed... gi\|49649442 - gi\|49649442\|emb\|CAG79154.1\| YALI0E05181p [Yarrowia lipolytica]	56.0	[0..56]	[154..31]
gi\|50419255, gi\|... - gi\|50419255\|ref\|XP_458150.1\| hypothetical protein DEHA0C11748g [Debaryomyces hansenii CBS767], gi\|49... gi\|49653816 - gi\|49653816\|emb\|CAG86221.1\| DEHA2C10736p [Debaryomyces hansenii]	55.0	[0..109]	[154..92]
gi\|40747392, gi\|... - gi\|67516335\|ref\|XP_658053.1\| hypothetical protein AN0449.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	53.0	[0..95]	[154..958]
gi\|68464867, gi\|... - gi\|68465244\|ref\|XP_723321.1\| hypothetical protein CaO19.12288 [Candida albicans SC5314], gi\|68464867... orf19.4825, orf1... - orf19.4825 CGDID:CAL0005336 Assembly 19, Contig19-10215 (233622, 233158) CDS, reverse complemented, ...	50.0	[0..112]	[154..111]
gi\|70990740, gi\|... - gi\|70990740\|ref\|XP_750219.1\| related to aimless RasGEF, putative [Aspergillus fumigatus Af293], gi\|6...	50.0	[0..87]	[154..836]
gi\|42553806, gi\|... - gi\|46136035\|ref\|XP_389709.1\| hypothetical protein FG09533.1 [Gibberella zeae PH-1], gi\|42553806\|gb\|E...	46.0	[0..116]	[154..63]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRPRTLRTY RGLIRAILKY ERPSKIVNWG NLRKAMITKL EYAKKQNQRD SHENINRQLE  60
   61 KWKKLDPVSD RSLNLFIADS KSLRSILQND IKWEKKVAQG QNVDEIFEHA LDIIKFLDNQ 120
  121 REYEELVDRY NPGNKLTQDE KVKRTANVVG LDVPT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.455	a.11.2	Second domain of FERM
View	Download	0.407	d.3.1	Cysteine proteinases
View	Download	0.390	a.74.1	Cyclin-like
View	Download	0.325	a.160.1	Poly(A) polymerase, middle domain
View	Download	0.322	c.55.3	Ribonuclease H-like
View	Download	0.289	a.118.1	ARM repeat
View	Download	0.258	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.214	a.116.1	GTPase activation domain, GAP

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits