YRC Public Data Repository - Protein Structure Prediction

Protein:	YIL096C
Organism:	Saccharomyces cerevisiae
Length:	336 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIL096C.

Description	E-value	Query Range	Subject Range
YIL096C - Putative protein of unknown function; associates with precursors of the 60S ribosomal subunit; predi... gi\|151943071 - gi\|151943071\|gb\|EDN61406.1\| conserved protein [Saccharomyces cerevisiae YJM789] BMT5_YEAST - 25S rRNA (uridine(2634)-N(3))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	0.0	[1..336]	[1..336]
gi\|8778331 - gi\|8778331\|gb\|AAF79340.1\|AC002304_33 F14J16.3 [Arabidopsis thaliana]	2.0E-85	[12..297]	[496..747]
BMT5_SCHPO - 25S rRNA (uridine-N(3))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... SPCC1919.13c - conserved eukaryotic protein	3.0E-69	[34..334]	[8..273]
gi\|13544003 - gi\|13544003\|gb\|AAH06136.1\| FDXACB1 protein [Homo sapiens]	9.0E-50	[73..314]	[6..196]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKLKGKIG SKGLKGALLR HKAKVKLVRN IESKQKHELR KKNSSANNKT VKRNQEFQKL  60
   61 NQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVMPFEKDET LMLCGEGDFS FARSIVEQNY IESDNLIITS YDNSVNELKL KYPHTFEENY  60
   61 QYLKDLNIPI FFQIDVTKLV KSFKISKNNT WFKIINRLSD HRWGNKPLQN IVFNFPHNGK 120
  121 GIKDQERNIR EHQDLIFNFF QNSLQLFNLI NTKIQNDTLR YTQGYDLNED TPQAKKLTAE 180
  181 GYGNIILSLF DGEPYDSWQI KLLAKKNGLT LSRSSKFQWE NFPGYHHRRT NSEQDTTKPA 240
  241 KERDARFYIF SKYVSNSSKH NRKSKKDTDS DSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits