YRC Public Data Repository - Protein Structure Prediction

Protein:	AVT7
Organism:	Saccharomyces cerevisiae
Length:	490 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVT7.

Description	E-value	Query Range	Subject Range
AVT7_YEAST - Vacuolar amino acid transporter 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT7 P... AVT7 - Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular ...	0.0	[1..490]	[1..490]
gi\|18913080 - gi\|18913080\|gb\|AAL79512.1\| Tap1p [Tetrahymena thermophila]	3.0E-68	[1..434]	[87..503]
AAP3_ARATH - Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2	9.0E-59	[2..331]	[29..385]
gi\|15216030 - gi\|15216030\|emb\|CAC51425.1\| amino acid permease AAP4 [Vicia faba var. minor]	2.0E-58	[1..331]	[34..390]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-58	[2..330]	[27..388]
gi\|4138679 - gi\|4138679\|emb\|CAA70778.1\| amino acid transporter [Vicia faba]	9.0E-58	[1..330]	[55..417]
gi\|13676299 - gi\|13676299\|gb\|AAK33098.1\| amino acid transporter [Glycine max]	4.0E-57	[1..330]	[59..421]

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Predicted Domain #1

Region A:
Residues: [1-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATSSALSS TANLVKTIVG AGTLAIPYSF KSDGVLVGVI LTLLAAVTSG LGLFVLSKCS  60
   61 KTLINPRNSS FFTLCMLTYP TLAPIFDLAM IVQCFGVGLS YLVLIGDLFP GLFGGERNYW 120
  121 IIASAVIIIP LCLVKKLDQL KYSSILGLFA LAYISILVFS HFVFELGKGE LTNILRNDIC 180
  181 WWKIHDFKGL LSTFSIIIFA FTGSMNLFPM INELKDNSME NITFVINNSI SLSTALFLIV 240
  241 GLSGYLTFGN ETLGNLMLNY DPNSIWIVIG KFCLGSMLIL SFPLLFHPLR IAVNNVIIWI 300
  301 EITYGGANPE EDPQVSEYTR ASNLRPISMT VEDPAQPSDA LDATSYNEQE CLLPNGNFDN 360
  361 GSIESQENNN DERGTMAVAG DNEHHAPFVK SRFYWITALL LISMYTLALS VQSFALVLSF 420
  421 VGATGSTSIS FTLPGLLGYK LIGLDSLAIG KMIPPKDRFY KRCSLLLVFY GLSVMFLSLY 480
  481 VTVFNRSDEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	135.455932
Match:	PF01490
Description:	Transmembrane amino acid transporter protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [308-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPEEDPQVSE YTRASNLRPI SMTVEDPAQP SDALDATSYN EQECLLPNGN FDNGSIESQE  60
   61 NNNDERGTMA VAGDNEHHAP FVKSRFYWIT ALLLISMYTL ALSVQSFALV LSFVGATGST 120
  121 SISFTLPGLL GYKLIGLDSL AIGKMIPPKD RFYKRCSLLL VFYGLSVMFL SLYVTVFNRS 180
  181 DEA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits