| Protein: | SDS3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 327 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDS3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..327] | [1..327] |
|
|
1.0E-32 | [8..195] | [1033..1232] |
|
|
5.0E-32 | [11..140] | [2..131] |
|
|
3.0E-26 | [8..195] | [1033..1232] |
|
|
5.0E-26 | [8..195] | [1033..1232] |
|
|
9.0E-26 | [10..174] | [453..625] |
|
|
2.0E-25 | [8..195] | [1033..1232] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MAIQKVSNKD LSRKDKRRFN IESKVNKIYQ NFYSERDNQY KDRLTALQTD LTSLHQGDNG 60
61 QYARQVRDLE EERDLELVRL RLFEEYRVSR SGIEFQEDIE KAKAEHEKLI KLCKERLYSS 120
121 IEQKIKKLQE ERLLMDVANV HSYAMNYSRP QYQKNTRSHT VSGWDSSSNE YGRDTANESA 180
181 TDTGAGNDRR TLRRRNA
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [198-327] |
1 11 21 31 41 51
| | | | | |
1 SKDTRGNNNN QDESDFQTGN GSGSNGHGSR QGSQFPHFNN LTYKSGMNSD SDFLQGINEG 60
61 TDLYAFLFGE KNPKDNANGN EKKKNRGAQR YSTKTAPPLQ SLKPDEVTED ISLIRELTGQ 120
121 PPAPFRLRSD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
