YRC Public Data Repository - Protein Structure Prediction

Protein:	RGI2
Organism:	Saccharomyces cerevisiae
Length:	164 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGI2.

Description	E-value	Query Range	Subject Range
RGI1_YEAS1 - Respiratory growth induced protein 1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RGI1 PE=3 SV=1 RGI1_YEAS2 - Respiratory growth induced protein 1 OS=Saccharomyces cerevisiae (strain JAY291) GN=RGI1 PE=3 SV=1 RGI1_YEAST - Respiratory growth induced protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RGI... RGI1_YEAS8 - Respiratory growth induced protein 1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mo... RGI1 - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... RGI1_YEAS7 - Respiratory growth induced protein 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=RGI1 PE=3 SV=1	1.0E-65	[1..160]	[1..158]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKDKKAKG PKMSTITTKS GESLKVFEDL HDFETYLKGE TEDQEFDHVH CQLKYYPPFV  60
   61 LHDAHDDPEK IKETANSHSK KFVRHLHQHV EKHLLKDIKT AINKPELKFH DKKKQESFDR 120
  121 IVWNYGEETE LNAKKFKVSV EVVCKHDGAM VDVDYKTEPL QPLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits