| Protein: | VHR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 640 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VHR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..640] | [1..640] |
|
|
0.0 | [74..399] | [1..342] |
|
Region A: Residues: [1-227] |
1 11 21 31 41 51
| | | | | |
1 MNGPPTFTQY RINKFSGNGA THKIRELLNF NDEKKWKQFS SRRLELIDKF QLSQYKASEQ 60
61 DQNIKQIATI LRTEFGYPVS CSKEFEKLVT AAVQSVRRNR KRSKKRYALS IANGSGGNVN 120
121 NSISSNSTSD DEISPSIYQR SNSDFLPSSN YAADFQFSNK FQPLMSHQSH NGTIFPTVGT 180
181 QNDSSPSVTS TQQKYNDIVT MLVHDLVTNV VPLSEQALKD PYTGPNL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [228-399] |
1 11 21 31 41 51
| | | | | |
1 SHFATSSLSQ QPNITTNIPI DSTVPFFLRE KLLLQIQRSR TCQDISQAAG SIDIYANLEI 60
61 LGEMSIRMSI AFVIERFFSN LVSSSMKYIT AKTCSPENLA LLSQRLFGAA TRHNLSHFPA 120
121 AQVQLRLLYL VIGGIVKDFG FDPTLYPLSE IIHHIVMVQY PLASSCASEP PS
|
| Detection Method: | |
| Confidence: | 7.44 |
| Match: | 1jfzA |
| Description: | RNase III endonuclease catalytic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [400-640] |
1 11 21 31 41 51
| | | | | |
1 SSPNKRVKRS PPVVSSDVML NNNNTLSNRA TLLTTLPMKP QSANKDVNRR VIIRFNDREQ 60
61 AFTFHQLSNG PPTVSEVLEN CKNLFNIINK NKNFGIFHND NLLNDESLAK LFDSFSTSEI 120
121 HLVIKDISTI PLQDAKIPVP ITLPKMSCIG ENPSMPSIPL VPQEKDDPKK SSLTAFDNIL 180
181 NRISKSPMNE ENSNTTLNTG TSTSNTNNND HNESVPAPYV TKNKNSFQNG NLPQPVFQPL 240
241 L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
