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View Structure Prediction Details

Protein: PRM2
Organism: Saccharomyces cerevisiae
Length: 656 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM2.

Description E-value Query
Range
Subject
Range
gi|50308277, gi|... - gi|50308277|ref|XP_454139.1| unnamed protein product [Kluyveromyces lactis], gi|49643274|emb|CAG9922...
gi|49643274 - gi|49643274|emb|CAG99226.1| KLLA0E04313p [Kluyveromyces lactis]
50.0 [0..6] [502..4]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVHIIKPL SLPQRFFSCI FHPLLLIFFT SVILTIWGSF SVIDITMAKM SHAQVKRNDT  60
   61 VSTFASISTA TATATTTATT TATMTAVTTQ HAIYSANSY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLNKTFIDNT IDQYFESKLR SIESTVGTDM QEKFKSYTDD ILDNKQKLIN DQISLETELI  60
   61 KEVLEVNNTI FNELLTKSQL INDTWNEISE DAMTIDKDSI SQMASNLLLN YSMFDSIFGN 120
  121 YSRKLKSLQN FNGTITDFST QLDTSSTLSL NFLRNSTDWL QLKRNFTANL QNEISILSGG 180
  181 STEVTSSTSI IKRSLKTNSE ENSVLSAVKN HVFRKCKRMT IIFTVMYFAF VILLMAIERI 240
  241 LFQLENQQVN LVMSQINGLT GQTNFTKYNK VLKSLITTLN LSTLYPIPYQ LTKLINQKIF 300
  301 KREPEKIDDK KVKKSKLFYC NWWIISNGAH LWLFGFLMLL IHWQIVTRLT NFEVPSLPTF 360
  361 HKRAGPSLYK REVWTDGNIT TTIEGFINDS VSLLCENFQM EVNEKFITAN LSLQTDPNLK 420
  421 VQSTDILNLW VNDTNTQFEK YLNESSQNWQ GIDLQVEPLL GSDSINEFLG QYFLPTYEVT 480
  481 N

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.31
Match:
Description: No description for 1l9uD was found.

Predicted Domain #3
Region A:
Residues: [581-656]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNSSFALDIQ KYGIINRGIN ITNASVAALS SLSKRQIKDK EQKQTYFLHT VYKWGLLAVC  60
   61 LTILFHHMLI FIILKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle