| Protein: | CST6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 587 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CST6.
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..171] | [507..96] |
|
|
197.0 | [0..7] | [389..682] |
|
|
190.0 | [0..7] | [418..670] |
|
|
184.0 | [0..162] | [544..89] |
|
|
183.0 | [0..127] | [531..81] |
|
|
182.0 | [0..162] | [544..89] |
|
Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MFTGQEYHSV DSNSNKQKDN NKRGIDDTSK ILNNKIPHSV SDTSAAATTT STMNNSALSR 60
61 SLDPTDINYS TNMAGVVDQI HDYTTSNRNS LTPQYSIAAG NVNSHDRVVK PSANSNYQQA 120
121 AYLRQQQQQD QRQQSPSMKT EEESQLYGDI LMNSGVVQDM HQNLATHTNL SQLSSTRKSA 180
181 PNDSTTAPTN ASNIANTASV NKQMYFMNMN MNNNPHALND PSILETLSPF FQPFGVDVAH 240
241 LPMTNPPIFQ SSLPGCDEPI RRRRISISNG QISQLGEDIE TLENLHNTQP PPMPNFHNYN 300
301
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [301-379] |
1 11 21 31 41 51
| | | | | |
1 GLSQTRNVSN KPVFNQAVPV SSIPQYNAKK VINPTKDSAL GDQSVIYSKS QQRNFVNAPS 60
61 KNTPAESISD LEGMTTFAP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.583 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.487 | a.4.1 | Homeodomain-like |
| View | Download | 0.430 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.430 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.381 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.370 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.298 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.275 | a.156.1 | S13-like H2TH domain |
|
Region A: Residues: [380-504] |
1 11 21 31 41 51
| | | | | |
1 TTGGENRGKS ALRESHSNPS FTPKSQGSHL NLAANTQGNP IPGTTAWKRA RLLERNRIAA 60
61 SKCRQRKKVA QLQLQKEFNE IKDENRILLK KLNYYEKLIS KFKKFSKIHL REHEKLNKDS 120
121 DNNVN
|
| Detection Method: | |
| Confidence: | 21.522879 |
| Match: | 1gtwA |
| Description: | CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [505-587] |
1 11 21 31 41 51
| | | | | |
1 GTNSSNKNES MTVDSLKIIE ELLMIDSDVT EVDKDTGKII AIKHEPYSQR FGSDTDDDDI 60
61 DLKPVEGGKD PDNQSLPNSE KIK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | a.77.1 | DEATH domain |
| View | Download | 0.461 | a.77.1 | DEATH domain |
| View | Download | 0.352 | a.77.1 | DEATH domain |
| View | Download | 0.296 | a.77.1 | DEATH domain |
| View | Download | 0.296 | a.77.1 | DEATH domain |
| View | Download | 0.266 | a.77.1 | DEATH domain |
| View | Download | 0.260 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.233 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.202 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
