| Protein: | SSM4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1319 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSM4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [383..1319] | [1..937] |
|
|
2.0E-74 | [616..829] | [68..269] |
|
|
1.0E-72 | [614..836] | [424..639] |
|
|
2.0E-39 | [7..180] | [44..214] |
|
|
8.0E-38 | [3..180] | [46..218] |
|
|
1.0E-36 | [14..212] | [232..409] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MDVDSDVNVS RLRDELHKVA NEETDTATFN DDAPSGATCR ICRGEATEDN PLFHPCKCRG 60
61 SIKYMHESCL LEWVASKNID ISKPGADVKC DICHYPIQFK TIYAENMPEK IPFSLLLSKS 120
121 ILTFFEKARL ALTIGLAAVL YIIGVPLVWN MFGKLYTMML DGSS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [165-605] |
1 11 21 31 41 51
| | | | | |
1 PYPGDFLKSL IYGYDQSATP ELTTRAIFYQ LLQNHSFTSL QFIMIVILHI ALYFQYDMIV 60
61 REDVFSKMVF HKIGPRLSPK DLKSRLKERF PMMDDRMVEY LAREMRAHDE NRQEQGHDRL 120
121 NMPAAAADNN NNVINPRNDN VPPQDPNDHR NFENLRHVDE LDHDEATEEH ENNDSDNSLP 180
181 SGDDSSRILP GSSSDNEEDE EAEGQQQQQQ PEEEADYRDH IEPNPIDMWA NRRAQNEFDD 240
241 LIAAQQNAIN RPNAPVFIPP PAQNRAGNVD QDEQDFGAAV GVPPAQANPD DQGQGPLVIN 300
301 LKLKLLNVIA YFIIAVVFTA IYLAISYLFP TFIGFGLLKI YFGIFKVILR GLCHLYYLSG 360
361 AHIAYNGLTK LVPKVDVAMS WISDHLIHDI IYLYNGYTEN TMKHSIFIRA LPALTTYLTS 420
421 VSIVCASSNL VSRGYGRENG M
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [606-837] |
1 11 21 31 41 51
| | | | | |
1 SNPTRRLIFQ ILFALKCTFK VFTLFFIELA GFPILAGVML DFSLFCPILA SNSRMLWVPS 60
61 ICAIWPPFSL FVYWTIGTLY MYWFAKYIGM IRKNIIRPGV LFFIRSPEDP NIKILHDSLI 120
121 HPMSIQLSRL CLSMFIYAIF IVLGFGFHTR IFFPFMLKSN LLSVPEAYKP TSIISWKFNT 180
181 ILLTLYFTKR ILESSSYVKP LLERYWKTIF KLCSRKLRLS SFILGKDTPT ER
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [838-1319] |
1 11 21 31 41 51
| | | | | |
1 GHIVYRNLFY KYIAAKNAEW SNQELFTKPK TLEQAEELFG QVRDVHAYFV PDGVLMRVPS 60
61 SDIVSRNYVQ TMFVPVTKDD KLLKPLDLER IKERNKRAAG EFGYLDEQNT EYDQYYIVYV 120
121 PPDFRLRYMT LLGLVWLFAS ILMLGVTFIS QALINFVCSF GFLPVVKLLL GERNKVYVAW 180
181 KELSDISYSY LNIYYVCVGS VCLSKIAKDI LHFTEGQNTL DEHAVDENEV EEVEHDIPER 240
241 DINNAPVNNI NNVEEGQGIF MAIFNSIFDS MLVKYNLMVF IAIMIAVIRT MVSWVVLTDG 300
301 ILACYNYLTI RVFGNSSYTI GNSKWFKYDE SLLFVVWIIS SMVNFGTGYK SLKLFFRNRN 360
361 TSKLNFLKTM ALELFKQGFL HMVIYVLPII ILSLVFLRDV STKQIIDISH GSRSFTLSLN 420
421 ESFPTWTRMQ DIYFGLLIAL ESFTFFFQAT VLFIQWFKST VQNVKDEVYT KGRALENLPD 480
481 ES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [607-725] |
1 11 21 31 41 51
| | | | | |
1 NPTRRLIFQI LFALKCTFKV FTLFFIELAG FPILAGVMLD FSLFCPILAS NSRMLWVPSI 60
61 CAIWPPFSLF VYWTIGTLYM YWFAKYIGMI RKNIIRPGVL FFIRSPEDPN IKILHDSLI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [726-839] |
1 11 21 31 41 51
| | | | | |
1 HPMSIQLSRL CLSMFIYAIF IVLGFGFHTR IFFPFMLKSN LLSVPEAYKP TSIISWKFNT 60
61 ILLTLYFTKR ILESSSYVKP LLERYWKTIF KLCSRKLRLS SFILGKDTPT ERGH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [840-990] |
1 11 21 31 41 51
| | | | | |
1 IVYRNLFYKY IAAKNAEWSN QELFTKPKTL EQAEELFGQV RDVHAYFVPD GVLMRVPSSD 60
61 IVSRNYVQTM FVPVTKDDKL LKPLDLERIK ERNKRAAGEF GYLDEQNTEY DQYYIVYVPP 120
121 DFRLRYMTLL GLVWLFASIL MLGVTFISQA L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [991-1085] |
1 11 21 31 41 51
| | | | | |
1 INFVCSFGFL PVVKLLLGER NKVYVAWKEL SDISYSYLNI YYVCVGSVCL SKIAKDILHF 60
61 TEGQNTLDEH AVDENEVEEV EHDIPERDIN NAPVN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1086-1319] |
1 11 21 31 41 51
| | | | | |
1 NINNVEEGQG IFMAIFNSIF DSMLVKYNLM VFIAIMIAVI RTMVSWVVLT DGILACYNYL 60
61 TIRVFGNSSY TIGNSKWFKY DESLLFVVWI ISSMVNFGTG YKSLKLFFRN RNTSKLNFLK 120
121 TMALELFKQG FLHMVIYVLP IIILSLVFLR DVSTKQIIDI SHGSRSFTLS LNESFPTWTR 180
181 MQDIYFGLLI ALESFTFFFQ ATVLFIQWFK STVQNVKDEV YTKGRALENL PDES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
