YRC Public Data Repository - Protein Structure Prediction

Protein:	URM1
Organism:	Saccharomyces cerevisiae
Length:	99 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URM1.

Description	E-value	Query Range	Subject Range
gi\|85101386 - gi\|85101386\|ref\|XP_961137.1\| hypothetical protein NCU04177 [Neurospora crassa OR74A] gi\|28922677, gi\|... - gi\|32405808\|ref\|XP_323517.1\| related to ubiquitin related modifier URM1 [MIPS] [Neurospora crassa], ...	154.0	[0..1]	[99..8]
gi\|56966838, gi\|... - gi\|56966838\|pdb\|1WGK\|A Chain A, Solution Structure Of Mouse Hypothetical Protein 2900073h19rik, gi\|1...	152.0	[0..2]	[99..12]
gi\|110590834 - gi\|110590834\|pdb\|2AX5\|A Chain A, Solution Structure Of Urm1 From Saccharomyces Cerevisiae	149.0	[0..1]	[99..1]
gi\|114627055 - gi\|114627055\|ref\|XP_520407.2\| PREDICTED: similar to Chromosome 9 open reading frame 74 [Pan troglody... URM1 - ubiquitin related modifier 1 homolog (S. cerevisiae)	149.0	[0..2]	[99..5]
gi\|109110232 - gi\|109110232\|ref\|XP_001118741.1\| PREDICTED: similar to CG33276-PA [Macaca mulatta] CCDS6900.1_1 - null	148.0	[0..2]	[99..5]
gi\|73967924 - gi\|73967924\|ref\|XP_850726.1\| PREDICTED: similar to CG33276-PA isoform 1 [Canis familiaris]	147.0	[0..2]	[99..5]
URM1_BOVIN - Ubiquitin-related modifier 1 OS=Bos taurus GN=URM1 PE=3 SV=1 URM1_CAPHI - Ubiquitin-related modifier 1 OS=Capra hircus GN=URM1 PE=3 SV=1	147.0	[0..2]	[99..5]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVKVEFLG GLDAIFGKQR VHKIKMDKED PVTVGDLIDH IVSTMINNPN DVSIFIEDDS  60
   61 IRPGIITLIN DTDWELEGEK DYILEDGDII SFTSTLHGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2qjlA
Description:	No description for 2qjlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits