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View Structure Prediction Details

Protein: BET1
Organism: Saccharomyces cerevisiae
Length: 142 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET1.

Description E-value Query
Range		 Subject
Range
SYP61_ARATH - Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
 2.0E-25 [1..141] [103..242]
gi|190406227 - gi|190406227|gb|EDV09494.1| protein transport protein BET1 [Saccharomyces cerevisiae RM11-1a]
BET1 - Type II membrane protein required for vesicular transport between the endoplasmic reticulum and Golg...
gi|151943154 - gi|151943154|gb|EDN61489.1| blocked early in transport [Saccharomyces cerevisiae YJM789]
BET1_YEAST - Protein transport protein BET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET1 PE=1...
 8.0E-23 [1..142] [1..142]
gi|10801642 - gi|10801642|dbj|BAB16738.1| hypothetical protein [Macaca fascicularis]
 4.0E-22 [4..115] [31..140]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-21 [17..136] [164..289]
gi|7595847, gi|7... - gi|7595847|gb|AAF64478.1| syntaxin 1A [Macaca mulatta], gi|74136291|ref|NP_001028037.1| syntaxin 1B ...
 2.0E-21 [17..136] [154..279]
STX1A_BOVIN - Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1
 3.0E-21 [17..140] [154..283]

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Predicted Domain #1
Region A:
Residues: [1-59] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRFAGGNA YQRDTGRTQL FGPADGSNSL DDNVSSALGS TDKLDYSQST LASLESQSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1dn1B_
Description: Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [60-142] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQMGAMGQRI KALKSLSLKM GDEIRGSNQT IDQLGDTFHN TSVKLKRTFG NMMEMARRSG  60
   61 ISIKTWLIIF FMVGVLFFWV WIT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1dn1B_
Description: Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle