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View Structure Prediction Details

Protein: YHR214C-C
Organism: Saccharomyces cerevisiae
Length: 478 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR214C-C.

Description E-value Query
Range
Subject
Range
YH11B_YEAST - Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1...
YHR214C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
676.0 [0..1] [476..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [180-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFPNWVKTYI KFLQNSNLGG IIPTVNGKPV PPMLTSPNDF PNWVKTYIKF LQNSNLGGII  60
   61 PTVNGKPVRQ ITDDELTFLY NTFQIFAPSQ FLPTWVKDIL SVDYTDIMKI LSKSIEKMQS 120
  121 DTQEANDIVT LANLQYNGST PADAFETKVT NIIDRLNNNG IHINNKVACQ LIMRGLSGEY 180
  181 KFLRYTRHRH LN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [372-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAELFLDI HAIYEEQQGS RNSKPNYRRN PSDEKNDSRS YTNTTKPKVI ARNPQKTNNS  60
   61 KSKTARAHNV STSNNSPSTD NDSISKSTTE PIQLNNKHDL HLRPETY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle