YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM18
Organism:	Saccharomyces cerevisiae
Length:	321 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM18.

Description	E-value	Query Range	Subject Range
AIM18_YEAS1 - Altered inheritance of mitochondria protein 18, mitochondrial OS=Saccharomyces cerevisiae (strain RM... AIM18_YEAST - Altered inheritance of mitochondria protein 18, mitochondrial OS=Saccharomyces cerevisiae (strain AT... AIM18_YEAS8 - Altered inheritance of mitochondria protein 18, mitochondrial OS=Saccharomyces cerevisiae (strain La... AIM18 - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi...	0.0	[1..321]	[1..321]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[9..321]	[1..313]
gi\|164426110, gi... - gi\|164426110\|ref\|XP_961584.2\| hypothetical protein NCU01218 [Neurospora crassa OR74A], gi\|157071202\|... gi\|16415981 - gi\|16415981\|emb\|CAB88565.2\| conserved hypothetical protein [Neurospora crassa]	1.0E-76	[96..318]	[155..376]
SPAC18G6.01c - conserved fungal protein YAQ1_SCHPO - Uncharacterized protein C18G6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6...	2.0E-67	[117..313]	[69..245]
FAP1_ARATH - Fatty-acid-binding protein 1 OS=Arabidopsis thaliana GN=FAP1 PE=1 SV=1	0.008	[83..320]	[57..275]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGRCANML KSLQRTLAKC QKSPSTNHWQ CFKRNFTSIR ATKYPGRSNS TFHYWPWFAA  60
   61 STLLATSLYY RDRPVQNDDK TDAFPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTESIQVDSS VSDFPLTITA LNFPVSTTFK LLGYGQRHVT FLRFKVYALG LYLAENDENL  60
   61 VSDTLNETYL HKYFLDVDDS KTPKENLARL LKRDDSKSVM MIDDLLDSGM RMLAKITPVR 120
  121 NTDFKHLKEG LVKTISKHPD VANNKDTLAK GLSELNDAFS RKGSVRKNDD LIIELLANGA 180
  181 LQFSYHDSKN NEFEVMGVVN NQLVGKFLFS QYLCGEKSPS PQAKKTAIDK LITLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits