| Protein: | RIX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 763 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIX1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..755] | [1..755] |
|
|
0.006 | [628..761] | [1145..1275] |
|
Region A: Residues: [1-763] |
1 11 21 31 41 51
| | | | | |
1 MSEEFIAVST LARNLEIAKG NEFHTILATL RSPVYINEQL LKSELSFLVT KILKLIRSGN 60
61 DFDLWKGCHT SVVTCAYNPL VLSTHGGQLL AAIYSRLEQK TGFYSSVISS SHGKQLFNTL 120
121 ISSVAIIIDL MKNKPTLSRE ALVPKLKAII PTLITLSQYE PELVLPVLQR ILKRNTTTFK 180
181 PFTNKFRTVL INLIISDYAS LGTKTQRLVC ENFAYLHLLK IQVSDTSDDE TQAHHKIYAD 240
241 SNWRTGLMSI LSQFKPIIQL CGEILDFEQD NELYKLIKSL PVIDESNNKE EFLPSLKLDF 300
301 NAPLTLWEIP QRLSLLADML VAFISLPTPF PIRVPLGGIN SLCEVLLGVS NKYLPLKKEL 360
361 RHDNELNGVI NTILPQIQFQ GIRLWEIMVS KYGKCGLSFF EGILSSIELF IPLKKKSNNE 420
421 IDFNVVGSLK FEFATVFRLV NMILSHLGHQ LNIISVISQL IEVALFLSHD KTLIDSLFKN 480
481 RKSIMKQQTK TKQSKRSKSA EGAFSDIYTH PELFVCKNSM NWFNEINDFF ITALNNWILP 540
541 STPHIQILKY SITQSLRLKE RFGYIPESFV NLLRCEVLHP GSERVSILPI AISLLKNIND 600
601 DMFELLCHPK VPVGMVYQLH KPLDLGEDGE VRDDINKKEV ETNESSSNAN TGLETLKALE 660
661 NLENVTIPEP KHEVPKVVDD TAIFKKRSVE EVIERESTSS HKKVKFVEET TVDNGEELIV 720
721 KKAVSQTKEE EKPMEDSEDE EQEEFEIPAI ELSDDEEEEE EGE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [113-227] |
1 11 21 31 41 51
| | | | | |
1 GKQLFNTLIS SVAIIIDLMK NKPTLSREAL VPKLKAIIPT LITLSQYEPE LVLPVLQRIL 60
61 KRNTTTFKPF TNKFRTVLIN LIISDYASLG TKTQRLVCEN FAYLHLLKIQ VSDTS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [228-449] |
1 11 21 31 41 51
| | | | | |
1 DDETQAHHKI YADSNWRTGL MSILSQFKPI IQLCGEILDF EQDNELYKLI KSLPVIDESN 60
61 NKEEFLPSLK LDFNAPLTLW EIPQRLSLLA DMLVAFISLP TPFPIRVPLG GINSLCEVLL 120
121 GVSNKYLPLK KELRHDNELN GVINTILPQI QFQGIRLWEI MVSKYGKCGL SFFEGILSSI 180
181 ELFIPLKKKS NNEIDFNVVG SLKFEFATVF RLVNMILSHL GH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [450-628] |
1 11 21 31 41 51
| | | | | |
1 QLNIISVISQ LIEVALFLSH DKTLIDSLFK NRKSIMKQQT KTKQSKRSKS AEGAFSDIYT 60
61 HPELFVCKNS MNWFNEINDF FITALNNWIL PSTPHIQILK YSITQSLRLK ERFGYIPESF 120
121 VNLLRCEVLH PGSERVSILP IAISLLKNIN DDMFELLCHP KVPVGMVYQL HKPLDLGED
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [629-763] |
1 11 21 31 41 51
| | | | | |
1 GEVRDDINKK EVETNESSSN ANTGLETLKA LENLENVTIP EPKHEVPKVV DDTAIFKKRS 60
61 VEEVIEREST SSHKKVKFVE ETTVDNGEEL IVKKAVSQTK EEEKPMEDSE DEEQEEFEIP 120
121 AIELSDDEEE EEEGE
|
| Detection Method: | |
| Confidence: | 0.965 |
| Match: | 1sa1E |
| Description: | TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.442176581181 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.76092523805452 | bayes_pls_golite062009 |
| tubulin binding | 1.69041482180803 | bayes_pls_golite062009 |
| protein binding | 1.57463316291212 | bayes_pls_golite062009 |
| microtubule binding | 0.761981518588091 | bayes_pls_golite062009 |
