YRC Public Data Repository - Protein Structure Prediction

Protein:	CTF8
Organism:	Saccharomyces cerevisiae
Length:	133 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF8.

Description	E-value	Query Range	Subject Range
gi\|44983812 - gi\|44983812\|gb\|AAS52848.1\| AER166Cp [Ashbya gossypii ATCC 10895] gi\|45190770, gi\|... - gi\|45190770\|ref\|NP_985024.1\| AER166Cp [Ashbya gossypii ATCC 10895], gi\|44983812\|gb\|AAS52848.1\| AER16...	122.0	[0..1]	[133..1]
gi\|49528971, gi\|... - gi\|50294492\|ref\|XP_449657.1\| hypothetical protein CAGL0M07117g [Candida glabrata CBS138], gi\|4952897... gi\|49528971 - gi\|49528971\|emb\|CAG62633.1\| unnamed protein product [Candida glabrata]	121.0	[0..1]	[133..1]
gi\|49640857 - gi\|49640857\|emb\|CAH02118.1\| KLLA0B04334p [Kluyveromyces lactis] gi\|50303567, gi\|... - gi\|50303567\|ref\|XP_451725.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640857\|emb\|CAH0211...	117.0	[0..1]	[133..1]
gi\|238882485 - gi\|238882485\|gb\|EEQ46123.1\| conserved hypothetical protein [Candida albicans WO-1] orf19.576, orf19... - CTF8 CGDID:CAL0000307 Assembly 19, Contig19-10057 (17427, 17915) CDS, translated using codon table 1... gi\|68483772, gi\|... - gi\|68483772\|ref\|XP_714161.1\| hypothetical protein CaO19.8207 [Candida albicans SC5314], gi\|68483691\|...	94.0	[0..1]	[133..1]
gi\|49654460, gi\|... - gi\|50420513\|ref\|XP_458793.1\| hypothetical protein DEHA0D08393g [Debaryomyces hansenii CBS767], gi\|49...	89.0	[0..1]	[133..1]
gi\|49088620, gi\|... - gi\|67523041\|ref\|XP_659581.1\| hypothetical protein AN1977.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	64.0	[0..1]	[132..194]
gi\|49649437 - gi\|49649437\|emb\|CAG79149.1\| YALI0E05071p [Yarrowia lipolytica] gi\|49649437, gi\|... - gi\|50552316\|ref\|XP_503568.1\| YALI0E05071p [Yarrowia lipolytica], gi\|49649437\|emb\|CAG79149.1\| unnamed...	60.0	[0..26]	[132..26]
gi\|66849397, gi\|... - gi\|70993832\|ref\|XP_751763.1\| sister chromatid cohesion protein Ctf8 [Aspergillus fumigatus Af293], g... gi\|159125317 - gi\|159125317\|gb\|EDP50434.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	59.0	[0..26]	[132..27]
gi\|169771547 - gi\|169771547\|ref\|XP_001820243.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220699056, gi... - gi\|238485878\|ref\|XP_002374177.1\| sister chromatid cohesion protein Ctf8, putative [Aspergillus flavu... gi\|83768102 - gi\|83768102\|dbj\|BAE58241.1\| unnamed protein product [Aspergillus oryzae]	57.0	[0..26]	[132..26]
gi\|115391355, gi... - gi\|115391355\|ref\|XP_001213182.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	56.0	[0..26]	[132..27]

Back

Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVDIDASQ WQKLTQSREK QTTVITPLGM MMLEIQGELE LPKDFASLAR RDSPNEGRFS  60
   61 EQDGETLIRF GSLQIDGERA TLFVGKKQRL LGKVTKLDVP MGIMHFNSKD NKVELVDVMK 120
  121 YKVIFKDRPL PIM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.79588
Match:	PF09696.1
Description:	No description for PF09696.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits