YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IKI1
Organism: Saccharomyces cerevisiae
Length: 309 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IKI1.

Description E-value Query
Range
Subject
Range
ELP5_YEAST - Elongator complex protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI1 PE=1 SV...
IKI1 - Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; iki1...
gi|151944131 - gi|151944131|gb|EDN62424.1| insensitive to killer toxin [Saccharomyces cerevisiae YJM789]
gi|207344506 - gi|207344506|gb|EDZ71629.1| YHR187Wp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..290] [1..290]
ELP5_SCHPO - Elongator complex protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki1 PE=3 SV=1
SPBC18E5.05c - RNA polymerase II elongator complex subunit
0.0 [18..291] [10..294]

Back

Predicted Domain #1
Region A:
Residues: [1-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSHNPVI LLKRILSLTE SSPFILCLDS IAQTSYKLIQ EFVHQSKSKG NEYPIVYISF  60
   61 ETVNKPSYCT QFIDATQMDF VHLVKQIISY LPAATATQAK KHMVIIDSLN YISTEYITRF 120
  121 LSEIASPHCT MVATYHKDIK DENRTVIPDW NNNYPDKLTL LQFMATTIVD IDVVLTGTLD 180
  181 TEEVSELLNE FRIPRGLNND IFQLRLVNKR KSGRSLEYDF IVNSNTHEYE LLSTTKQEEE 240
  241 SSSNGLETPE MLQGLTTFNL GTSNKQKLAK DQVALPFLEA QSFGQGGAIV YEYEKDDDYD 300
  301 EEDPYEDPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle