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View Structure Prediction Details

Protein: SVP26
Organism: Saccharomyces cerevisiae
Length: 228 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SVP26.

Description E-value Query
Range
Subject
Range
gi|151944125 - gi|151944125|gb|EDN62418.1| sed5 vesicle protein [Saccharomyces cerevisiae YJM789]
gi|190405957 - gi|190405957|gb|EDV09224.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|207344511 - gi|207344511|gb|EDZ71631.1| YHR181Wp-like protein [Saccharomyces cerevisiae AWRI1631]
SVP26 - Integral membrane protein of the early Golgi apparatus and endoplasmic reticulum, involved in COP II...
ORFP:9703 - YHR181W, Contig c31 3547-4233 reverse complement
SVP26_YEAST - Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1
2.0E-82 [1..228] [1..228]
SPCC1795.10c - Sed5 Vesicle Protein Svp26
SVP26_SCHPO - Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1
3.0E-56 [1..168] [2..174]
TX261_RAT - Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1
TX261_MOUSE - Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1
2.0E-53 [3..191] [4..171]
gi|18446873 - gi|18446873|gb|AAL68029.1| AT03803p [Drosophila melanogaster]
8.0E-48 [2..194] [3..178]
gi|6473424 - gi|6473424|dbj|BAA87131.1| Hypothetical protein [Schizosaccharomyces pombe]
1.0E-44 [28..168] [1..146]
gi|1809329 - gi|1809329|gb|AAB41674.1| steroidogenic acute regulatory protein [Rattus norvegicus]
1.0E-33 [47..148] [1..86]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
1.0E-33 [47..148] [1..86]
gi|19069565, gi|... - gi|19074840|ref|NP_586346.1| similarity to HYPOTHETICAL PROTEIN YHY1_yeast [Encephalitozoon cuniculi...
gi|19074840 - gi|19074840|ref|NP_586346.1| similarity to HYPOTHETICAL PROTEIN YHY1_yeast [Encephalitozoon cuniculi...
0.001 [5..166] [9..149]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLELISYAG TVSGFLFLTL SIASGLYYIS ELVEEHTEPT RRFLTRAIYG IILILILLLL  60
   61 LDGFPFKLTL FSIACYIVYY QNLKSFPFIS LTSPTFLLSC VCVVLNHYFW FKYFNDTEVP 120
  121 PQFKFDPNYI PRRRASFAEV ASFFGICVWF IPFALFVSLS AGDYVLPTTS EQHMAKKNDD 180
  181 ITTNNQPKFR KRAVGLARVV INSVRKYIYS LARVFGYEIE PDFDRLAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle