YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR177W
Organism:	Saccharomyces cerevisiae
Length:	453 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR177W.

Description	E-value	Query Range	Subject Range
YHR177W - Putative protein of unknown function; overexpression causes a cell cycle delay or arrest YHX7_YEAST - Uncharacterized protein YHR177W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR177W ...	0.0	[1..453]	[1..453]
pac2 - cAMP-independent regulatory protein Pac2 PAC2_SCHPO - cAMP-independent regulatory protein pac2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=p...	1.0E-47	[7..159]	[3..178]
gi\|19074447, gi\|... - gi\|19074447\|ref\|NP_585953.1\| hypothetical protein ECU07_0250 [Encephalitozoon cuniculi GB-M1], gi\|19... gi\|19074447 - ref\|NP_585953.1\| hypothetical protein [Encephalitozoon cuniculi]	2.0E-40	[9..145]	[5..140]
gi\|4837600 - gi\|4837600\|emb\|CAB42993.1\| proline transport helper PTH2 [Candida albicans]	7.0E-13	[61..161]	[1..78]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDISPTCYG YIDDEQDLAL VFQGVFNGNL RCIERRPYDA EKVELVNPGN IFVFNEEKSG  60
   61 IKRWTDGFSW SPSRISGKFL VYREYNRLGS THDLPLHNVP EYNIFERAHR KYFYTGLLKK 120
  121 TFSLKFNMDP TDSTKLETFH LIAYYTEKDI HQGSLRRPSE NPFFHKFRPS QKLLDALQKV 180
  181 AVGNGRSNPS KNNERGRTKA HNYKTRRSLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [211-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPSYCDLLS NYNNHPGNIP VRTAVQLPLT TFNNAPREMH QQQHRQQQQY LLPIDEQNKL  60
   61 PLPYMQHQPQ PIGVYNPNYQ PGLRRTVSQP MIFCNTYNTL PQQPTAAPYE RRGVSPSVIY 120
  121 SSNTLSPIPY QNIDPYSSRS GPECNHSKAP IAPTMMPPVH HILVHDYRQP KPVTDSINPP 180
  181 NVNITTSTTN KNLDGIYILP APRMNPPAQT QYQMIHAPDS MQHPPTFSKN NTSSNPKSHQ 240
  241 YSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits