YRC Public Data Repository - Protein Structure Prediction

Protein:	CTR2
Organism:	Saccharomyces cerevisiae
Length:	189 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTR2.

Description	E-value	Query Range	Subject Range
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	180.0	[0..21]	[189..3]
gi\|109110536 - gi\|109110536\|ref\|XP_001103110.1\| PREDICTED: solute carrier family 31 (copper transporters), member 1...	167.0	[0..21]	[189..9]
SLC31A1 - solute carrier family 31 (copper transporters), member 1 gi\|114626217 - gi\|114626217\|ref\|XP_520197.2\| PREDICTED: solute carrier family 31 (copper transporters), member 1 is... gi\|123995913, gi... - gi\|123995913\|gb\|ABM85558.1\| solute carrier family 31 (copper transporters), member 1 [synthetic cons...	166.0	[0..21]	[189..9]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	166.0	[0..24]	[189..1]
COPT1_PONPY - High affinity copper uptake protein 1 - Pongo pygmaeus (Orangutan) COPT1_PONAB - High affinity copper uptake protein 1 OS=Pongo abelii GN=SLC31A1 PE=2 SV=1	166.0	[0..21]	[189..9]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	164.0	[0..22]	[189..65]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	164.0	[0..25]	[189..20]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDKKTWSTV TLRTFNQLVT SSLIGYSKKM DSMNHKMEGN AGHDHSDMHM GDGDDTCSMN  60
   61 MLFSWSYKNT CVVFEWWHIK TLPGLILSCL AIFGLAYLYE YLKYCVHKRQ LSQRVLLPNR 120
  121 SLTKINQADK VSNSILYGLQ VGFSFMLMLV FMTYNGWLML AVVCGAIWGN YSWCTSYSPE 180
  181 IDDSSLACH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.657577
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.673	N/A	N/A	f.25.1	Cytochrome c oxidase subunit III-like
View	Download	0.673	N/A	N/A	f.25.1	Cytochrome c oxidase subunit III-like
View	Download	0.535	N/A	N/A	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.535	N/A	N/A	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.489	N/A	N/A	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.489	N/A	N/A	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.423	N/A	N/A	f.57.1	Description not found.
View	Download	0.418	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.418	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.410	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.318	N/A	N/A	d.110.4	SNARE-like
View	Download	0.254	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.202	N/A	N/A	d.110.4	SNARE-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits