YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR162W
Organism:	Saccharomyces cerevisiae
Length:	129 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR162W.

Description	E-value	Query Range	Subject Range
FMP43 - Putative protein of unknown function; expression regulated by osmotic and alkaline stresses; the aut... gi\|151943517 - gi\|151943517\|gb\|EDN61828.1\| conserved protein [Saccharomyces cerevisiae YJM789] MPC3_YEAST - Mitochondrial pyruvate carrier 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPC3 PE... gi\|190406751 - gi\|190406751\|gb\|EDV10018.1\| hypothetical protein SCRG_00781 [Saccharomyces cerevisiae RM11-1a]	181.0	[0..1]	[117..1]
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	168.0	[0..6]	[125..36]
gi\|50302615, gi\|... - gi\|50302615\|ref\|XP_451243.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640374\|emb\|CAH0283... gi\|49640374 - gi\|49640374\|emb\|CAH02831.1\| KLLA0A05500p [Kluyveromyces lactis]	168.0	[0..3]	[120..2]
gi\|7504062 - gi\|7504062\|pir\|\|T25797 hypothetical protein F53F10.3 - Caenorhabditis elegans	167.0	[0..4]	[109..21]
gi\|49526656 - gi\|49526656\|emb\|CAG60283.1\| unnamed protein product [Candida glabrata] gi\|50289829, gi\|... - gi\|50289829\|ref\|XP_447346.1\| hypothetical protein CAGL0I02178g [Candida glabrata CBS138], gi\|4952665...	163.0	[0..1]	[124..1]
gi\|44983293 - gi\|44983293\|gb\|AAS52475.1\| AEL210Cp [Ashbya gossypii ATCC 10895] gi\|45190397, gi\|... - gi\|45190397\|ref\|NP_984651.1\| AEL210Cp [Ashbya gossypii ATCC 10895], gi\|44983293\|gb\|AAS52475.1\| AEL21...	163.0	[0..1]	[117..1]
gi\|12852283 - gi\|12852283\|dbj\|BAB29347.1\| unnamed protein product [Mus musculus]	163.0	[0..2]	[106..63]
gi\|7488128, gi\|7... - pir\|\|F71409 probable light induced protein - Arabidopsis thaliana, gi\|7268175\|emb\|CAB78511.1\| light ...	163.0	[0..1]	[106..210]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSVRFAF RRFWQSETGP KTVHFWAPTL KWGLVFAGFS DMKRPVEKIS GAQNLSLLST  60
   61 ALIWTRWSFV IKPRNILLAS VNSFLCLTAG YQLGRIANYR IRNGDSISQL CSYILSGADE 120
  121 SKKEITTGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.275724
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.979	N/A	N/A	a.29.16	Description not found.
View	Download	0.943	N/A	N/A	a.29.13	Description not found.
View	Download	0.924	N/A	N/A	a.216.1	Description not found.
View	Download	0.915	N/A	N/A	a.29.13	Description not found.
View	Download	0.868	N/A	N/A	a.29.13	Description not found.
View	Download	0.748	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.732	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.731	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.708	N/A	N/A	a.75.1	Ribosomal protein S7
View	Download	0.690	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits