YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL42B, RPL42A
Organism:	Saccharomyces cerevisiae
Length:	106 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL42B, RPL42A.

Description	E-value	Query Range	Subject Range
RPL36AL - ribosomal protein L36a-like gi\|114652883, gi... - gi\|114652885\|ref\|XP_001152404.1\| PREDICTED: similar to ribosomal protein isoform 3 [Pan troglodytes]...	7.0E-30	[1..106]	[1..106]
RL36A_MOUSE - 60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=1 SV=2 RL36A_BOVIN - 60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3 RL36A_CANLF - 60S ribosomal protein L36a OS=Canis lupus familiaris GN=Rpl36a PE=1 SV=1 RPL36A - ribosomal protein L36a gi\|194228108 - gi\|194228108\|ref\|XP_001492679.2\| PREDICTED: similar to mCG7611 [Equus caballus] gi\|126325887, gi... - gi\|126325887\|ref\|XP_001365970.1\| PREDICTED: similar to ribosomal protein L36a [Monodelphis domestica... RL36A_PIG - 60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=1 SV=2 tr\|G3HLJ9\|G3HLJ9... - 60S ribosomal protein L36a OS=Cricetulus griseus GN=I79_011589 PE=3 SV=1 CCDS9689.1_1 - null tr\|M3WWJ1\|M3WWJ1... - Uncharacterized protein OS=Felis catus GN=RPL36AL PE=3 SV=1 ENSPTRT00000041173 - null RL36A_RAT - 60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2 ENSCJAT000000338... - null, null gi\|109085177, gi... - gi\|109097856\|ref\|XP_001082219.1\| PREDICTED: similar to large subunit ribosomal protein L36a [Macaca ... ENSOCUP000000194... - pep:novel chromosome:oryCun2:16:23003598:23003918:1 gene:ENSOCUG00000017531 transcript:ENSOCUT000000...	9.0E-30	[1..106]	[1..106]
gi\|1272507 - gi\|1272507\|dbj\|BAA07783.1\| L41 ribosomal protein [Candida maltosa]	2.0E-29	[1..106]	[1..106]
gi\|164691011 - gi\|164691011\|dbj\|BAF98688.1\| ribosomal protein L36a [Solea senegalensis] gi\|225706216 - gi\|225706216\|gb\|ACO08954.1\| 60S ribosomal protein L36a [Osmerus mordax] RL36A_DANRE - 60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=3 SV=2 RL36A_ICTPU - 60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2 RL36A_TAKRU - 60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2	6.0E-29	[1..106]	[1..106]
RL44_CANTR - 60S ribosomal protein L44 OS=Candida tropicalis GN=RPL44 PE=3 SV=2	9.0E-29	[1..106]	[1..106]
RL44_CRYNJ - 60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC... RL44_CRYNB - 60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=... RL44_CRYNE - 60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3	9.0E-29	[1..106]	[1..106]
RL44_CYBJA - 60S ribosomal protein L44 OS=Cyberlindnera jadinii GN=RPL44 PE=3 SV=2	2.0E-28	[1..106]	[1..106]
RL44_WICCI, RL44... - 60S ribosomal protein L44 OS=Wickerhamomyces ciferrii GN=RPL44 PE=3 SV=3, 60S ribosomal protein L44 ... RL44_WICCF - 60S ribosomal protein L44 OS=Wickerhamomyces ciferrii (strain F-60-10 / ATCC 14091 / CBS 111 / JCM 3...	8.0E-28	[1..106]	[1..106]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-28	[1..106]	[11..116]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVPKTRKT YCKGKTCRKH TQHKVTQYKA GKASLFAQGK RRYDRKQSGF GGQTKPVFHK  60
   61 KAKTTKKVVL RLECVKCKTR AQLTLKRCKH FELGGEKKQK GQALQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	277.68867
Match:	1k5y1_
Description:	No description for 1k5y1_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits