YRC Public Data Repository - Protein Structure Prediction

Protein:	LSM12
Organism:	Saccharomyces cerevisiae
Length:	187 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM12.

Description	E-value	Query Range	Subject Range
gi\|151944067 - gi\|151944067\|gb\|EDN62360.1\| conserved protein [Saccharomyces cerevisiae YJM789] LSM12_YEAST - Protein LSM12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM12 PE=1 SV=1 gi\|207344586 - gi\|207344586\|gb\|EDZ71685.1\| YHR121Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405900 - gi\|190405900\|gb\|EDV09167.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] LSM12 - Protein of unknown function that may function in RNA processing; interacts with Pbp1p and Pbp4p and ...	6.0E-63	[1..187]	[1..187]
CG14164-PB, CG14... - This gene is referred to in FlyBase by the symbol Dmel\CG14164 (CG14164, FBgn0036057). It is a prote...	1.0E-53	[8..174]	[9..181]
gi\|9369397, gi\|2... - gi\|9369397\|gb\|AAF87145.1\|AC002423_10 T23E23.20 [Arabidopsis thaliana], pir\|\|B86374 protein T23E23.20...	8.0E-49	[9..179]	[21..179]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLEQTLG FRIKVTNVLD VVTEGRLYSF NSSNNTLTIQ TTKKNQSPQN FKVIKCTFIK  60
   61 HLEVIGDKPS FNSFKKQQIK PSYVNVERVE KLLKESVIAS KKKELLRGKG VSAEGQFIFD 120
  121 QIFKTIGDTK WVAKDIIILD DVKVQPPYKV EDIKVLHEGS NQSITLIQRI VERSWEQLEQ 180
  181 DDGRKGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
	4.07740034050179	bayes_pls_golite062009
RNA binding	3.27319059794493	bayes_pls_golite062009
nucleic acid binding	2.61608895983631	bayes_pls_golite062009
binding	1.98357769931197	bayes_pls_golite062009
mRNA binding	0.315204974525072	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: