YRC Public Data Repository - Protein Structure Prediction

Protein:	SBE22
Organism:	Saccharomyces cerevisiae
Length:	852 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBE22.

Description	E-value	Query Range	Subject Range
SBE2 - Protein involved in the transport of cell wall components from the Golgi to the cell surface; requir... SBE2_YEAST - Protein SBE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBE2 PE=1 SV=2 SBE2_YEAS7 - Protein SBE2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SBE2 PE=3 SV=1	1386.0	[0..10]	[852..13]
SBE22_CANGA - Protein SBE22 OS=Candida glabrata GN=SBE22 PE=3 SV=1 SBE22_CANGA - Protein SBE22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN...	778.0	[0..31]	[852..3]
SBE2_ASHGO - Protein SBE2 OS=Ashbya gossypii GN=SBE2 PE=3 SV=1 SBE2_ASHGO - Protein SBE2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SBE2 P...	508.0	[0..289]	[845..275]
SBE2_KLULA - Protein SBE2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1... SBE2_KLULA - Protein SBE2 OS=Kluyveromyces lactis GN=SBE2 PE=3 SV=1	501.0	[0..30]	[852..6]
gi\|70987144, gi\|... - gi\|70987144\|ref\|XP_749052.1\| TBC domain protein [Aspergillus fumigatus Af293], gi\|66846682\|gb\|EAL870...	70.0	[0..146]	[519..33]
gi\|50422271, gi\|... - gi\|50422271\|ref\|XP_459698.1\| hypothetical protein DEHA0E09559g [Debaryomyces hansenii CBS767], gi\|49...	69.0	[0..44]	[687..37]
gi\|67526589, gi\|... - gi\|67526589\|ref\|XP_661356.1\| hypothetical protein AN3752.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	69.0	[0..212]	[567..51]
gi\|90299155, gi\|... - gi\|90299155\|gb\|EAS28786.1\| hypothetical protein CIMG_07532 [Coccidioides immitis RS], gi\|119177092\|r...	59.0	[0..475]	[555..380]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIQERGTS AHLHSLKEGE ASDRSSEMLP KQRSIIGSHV QRPPSQTTLG RSRAGSNTMN  60
   61 KVSGLDIARR PSENLLSNMN CSDNGNGGNM LNSFVNSALP PPKVNPAQTR RERPASNSSI 120
  121 GTKTTEVFSS TSASSSLGDT SDEGEGSDAD KSKINTFPSI LMEKATQGRG ADGNGMRSAS 180
  181 NNTIVEATTD GSKMALQKSM SFDDTAAEKT MNKSRHSYQE QFSSKKSQSS LLNSKQRSRA 240
  241 KSQTCSSTGY NNSSILKTFG ISSKISNSSD RIEASSLEFN VPSQKPLNCK PLTPSQKYRL 300
  301 RKEQSEMNLR NTIKRKEKFY DSQEQILELQ EGDVDDSLIW NVPMASLSTN SFLASA

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	10.19
Match:
Description:	No description for 1i3qA was found.

Predicted Domain #2

Region A:
Residues: [357-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPDDMNNLAG KNDLSEYTGG LVNDNSEISY TKQNHRYSNI SFASTTSNAS LLDFNEMPTS  60
   61 PIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.886	d.17.3	Disulfide bond isomerase, DsbC, N-terminal domain
View	Download	0.885	d.50.3	PI-Pfui intein middle domain
View	Download	0.860	b.122.1	PUA domain-like
View	Download	0.853	d.17.3	Disulfide bond isomerase, DsbC, N-terminal domain
View	Download	0.847	d.17.3	Disulfide bond isomerase, DsbC, N-terminal domain
View	Download	0.685	b.122.1	PUA domain-like
View	Download	0.672	b.122.1	PUA domain-like

Predicted Domain #3

Region A:
Residues: [420-608]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLNKVTDFQF IQDTTKSLAS VYLHSSNRLS RSKLSERTKS SDFLPIELKE AQNQGMEDLI  60
   61 LVSENKLDVV SHSRPSWLPP KDRQEKKLHE RQINKSMSVA SLDQLGKNKD REEKLIRDET 120
  121 NRQKYVLLLD RDITRNSSLQ SLSKMVWDTP FSDETRSTIY SEILQSKTRF ITKNYIQPFH 180
  181 ELQELLTKM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [609-852]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDFPKNKEIE ISQLIETSLR RKVSGLHDIC PDLMLLLKIK SISSQGIVTG DELLFHHFLV  60
   61 SESFQNLGLN EIWNIVNLVQ MTCFNDLCKE KFDAKVLERK GVVAGYLSQN EEFKDEFNTE 120
  121 CINSTTWWNI LERIDHKLFM WIMDIIVVNN SQSYKNSPIN EDEFVNKDWE YYRSKKVVIN 180
  181 YKILISFALN VLLNYHFGFT DLRSLCNVND QRFCIPVFIN DEFVDADTVN AVFIKKWAHY 240
  241 YKKF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits