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View Structure Prediction Details

Protein: RTC3
Organism: Saccharomyces cerevisiae
Length: 111 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTC3.

Description E-value Query
Range
Subject
Range
gi|30749784 - gi|30749784|pdb|1NYN|A Chain A, Solution Nmr Structure Of Protein Yhr087w From Saccharomyces Cerevis...
199.0 [0..1] [111..21]
SPBC21C3.19 - DUF1960 family protein
SDO1L_SCHPO - SDO1-like protein C21C3.19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.19 PE=...
145.0 [0..5] [90..9]
gi|49645186, gi|... - gi|50312037|ref|XP_456050.1| unnamed protein product [Kluyveromyces lactis], gi|49645186|emb|CAG9875...
gi|49645186 - gi|49645186|emb|CAG98758.1| KLLA0F21736p [Kluyveromyces lactis]
112.0 [0..1] [96..1]
gi|49526195 - gi|49526195|emb|CAG59819.1| unnamed protein product [Candida glabrata]
gi|49526195, gi|... - gi|50288913|ref|XP_446886.1| unnamed protein product [Candida glabrata], gi|49526195|emb|CAG59819.1|...
110.0 [0..2] [102..25]
gi|115390082, gi... - gi|115390082|ref|XP_001212546.1| conserved hypothetical protein [Aspergillus terreus NIH2624], gi|11...
79.0 [0..5] [96..9]
gi|111057350, gi... - gi|169622039|ref|XP_001804429.1| hypothetical protein SNOG_14233 [Phaeosphaeria nodorum SN15], gi|11...
75.0 [0..5] [106..9]
gi|50425501, gi|... - gi|50425501|ref|XP_461344.1| hypothetical protein DEHA0F24508g [Debaryomyces hansenii CBS767], gi|49...
gi|49657013 - gi|49657013|emb|CAG89750.1| DEHA2F23078p [Debaryomyces hansenii]
75.0 [0..6] [95..8]
gi|220699751, gi... - gi|238487268|ref|XP_002374872.1| RNA binding protein, putative [Aspergillus flavus NRRL3357], gi|220...
gi|169770333 - gi|169770333|ref|XP_001819636.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83767495 - gi|83767495|dbj|BAE57634.1| unnamed protein product [Aspergillus oryzae]
72.0 [0..6] [104..10]
gi|70992721, gi|... - gi|70992721|ref|XP_751209.1| conserved hypothetical protein [Aspergillus fumigatus Af293], gi|668488...
72.0 [0..5] [101..8]
gi|46108770, gi|... - gi|46108770|ref|XP_381443.1| hypothetical protein FG01267.1 [Gibberella zeae PH-1], gi|42547733|gb|E...
70.0 [0..5] [94..9]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP QDGRGAEGEL  60
   61 GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT KGGNAGTKAY N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.0
Match: 1nynA
Description: Hypothetical protein Yhr087W
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle