YRC Public Data Repository - Protein Structure Prediction

Protein:	RTC3
Organism:	Saccharomyces cerevisiae
Length:	111 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTC3.

Description	E-value	Query Range	Subject Range
gi\|30749784 - gi\|30749784\|pdb\|1NYN\|A Chain A, Solution Nmr Structure Of Protein Yhr087w From Saccharomyces Cerevis...	199.0	[0..1]	[111..21]
SPBC21C3.19 - DUF1960 family protein SDO1L_SCHPO - SDO1-like protein C21C3.19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.19 PE=...	145.0	[0..5]	[90..9]
gi\|49645186, gi\|... - gi\|50312037\|ref\|XP_456050.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645186\|emb\|CAG9875... gi\|49645186 - gi\|49645186\|emb\|CAG98758.1\| KLLA0F21736p [Kluyveromyces lactis]	112.0	[0..1]	[96..1]
gi\|49526195 - gi\|49526195\|emb\|CAG59819.1\| unnamed protein product [Candida glabrata] gi\|49526195, gi\|... - gi\|50288913\|ref\|XP_446886.1\| unnamed protein product [Candida glabrata], gi\|49526195\|emb\|CAG59819.1\|...	110.0	[0..2]	[102..25]
gi\|115390082, gi... - gi\|115390082\|ref\|XP_001212546.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	79.0	[0..5]	[96..9]
gi\|111057350, gi... - gi\|169622039\|ref\|XP_001804429.1\| hypothetical protein SNOG_14233 [Phaeosphaeria nodorum SN15], gi\|11...	75.0	[0..5]	[106..9]
gi\|50425501, gi\|... - gi\|50425501\|ref\|XP_461344.1\| hypothetical protein DEHA0F24508g [Debaryomyces hansenii CBS767], gi\|49... gi\|49657013 - gi\|49657013\|emb\|CAG89750.1\| DEHA2F23078p [Debaryomyces hansenii]	75.0	[0..6]	[95..8]
gi\|220699751, gi... - gi\|238487268\|ref\|XP_002374872.1\| RNA binding protein, putative [Aspergillus flavus NRRL3357], gi\|220... gi\|169770333 - gi\|169770333\|ref\|XP_001819636.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767495 - gi\|83767495\|dbj\|BAE57634.1\| unnamed protein product [Aspergillus oryzae]	72.0	[0..6]	[104..10]
gi\|70992721, gi\|... - gi\|70992721\|ref\|XP_751209.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668488...	72.0	[0..5]	[101..8]
gi\|46108770, gi\|... - gi\|46108770\|ref\|XP_381443.1\| hypothetical protein FG01267.1 [Gibberella zeae PH-1], gi\|42547733\|gb\|E...	70.0	[0..5]	[94..9]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP QDGRGAEGEL  60
   61 GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT KGGNAGTKAY N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1nynA
Description:	Hypothetical protein Yhr087W
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits