YRC Public Data Repository - Protein Structure Prediction

Protein:	IPI1
Organism:	Saccharomyces cerevisiae
Length:	334 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPI1.

Description	E-value	Query Range	Subject Range
IPI1_YEAS7 - Pre-rRNA-processing protein IPI1 OS=Saccharomyces cerevisiae (strain YJM789) GN=IPI1 PE=3 SV=1 IPI1 - Essential component of the Rix1 complex (with Rix1p and Ipi3p) that is required for processing of IT... IPI1_YEAST - Pre-rRNA-processing protein IPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IPI1 PE...	0.0	[1..334]	[1..334]
gi\|19075464 - gi\|19075464\|ref\|NP_587964.1\| hypothetical protein SPCC1393.06c [Schizosaccharomyces pombe 972h-] SPCC1393.06c - rRNA processing protein Ipi1	6.0E-75	[1..263]	[1..278]
gi\|15240021, gi\|... - gi\|9758415\|dbj\|BAB08957.1\| unnamed protein product [Arabidopsis thaliana], gi\|15240021\|ref\|NP_196253...	1.0E-53	[5..165]	[9..182]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-50	[5..164]	[9..181]
gi\|8923269, gi\|7... - gi\|8923269\|ref\|NP_060216.1\| testis expressed 10 [Homo sapiens], gi\|7020280\|dbj\|BAA91062.1\| unnamed p...	7.0E-47	[1..180]	[1..187]
gi\|220946868, gi... - gi\|220956412\|gb\|ACL90749.1\| CG1575-PA [synthetic construct], gi\|220946868\|gb\|ACL85977.1\| CG1575-PA [... FBpp0308752, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG1575 (CG1575, FBgn0029999). It is a protein...	3.0E-38	[7..194]	[6..204]
gi\|13905150, gi\|... - gi\|13905150\|gb\|AAH06867.1\| Tex10 protein [Mus musculus], gi\|123229710\|emb\|CAM16566.1\| testis express...	4.0E-8	[142..180]	[1..39]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSRKQKQK KQDFLRKKLK VGKPKEKARN ATDTSFVSKT ISIRNQHLDQ NPHDLTKRLT  60
   61 LLKHHNINVR KETLTTFQKS IPSIIKSRLM TPLLTQSIPL ICDESQQVRQ GLIDLVDEIG 120
  121 SHDAEILKLH CNIFVLYINM AMTHIVTQIQ ADSTKFLSHL LKYCGDEVVR KSWVKLLNGV 180
  181 FGVLGWGQVG KNDSASIVQT KKRNAKYVTI HLNALYTLVE YGCQDERARS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [231-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDTAETTED SGTLRNPYLI PDYPQPFEHL KLFTRELKVQ DATSSGVNAT LLSLATQDID  60
   61 TRKAVFIEQF LPIVRKKIEV IIKEGGECGK SANKLKTLLA KIFD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits